Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I02
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    48   1e-06
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      44   1e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    37   0.003
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    31   0.097
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.17 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.2  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    27   1.6  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    26   4.8  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   4.8  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.5  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 123 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 278
           C KC +SV +  +   GG  WH  CFKC  C K LD ++     + + ++FCK+C
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 87  STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGE 260
           ST P  ++      C  CG S+ A     A G K H  CFKC  C + L+       EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303

Query: 261 LFCKVCHARKF 293
            +C + +  +F
Sbjct: 304 FYCHLDYHEQF 314



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 120 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVCHA 284
           KC KC K +     + + G ++H  C+ CG C  LL        E    C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 123 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGMCQKLLDSTN---CSEHEGELFCKVC 278
           C +CG++    E  ++ GG  WHK CF C  C K L+ ++       +G   C  C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74



 Score = 34.3 bits (75), Expect = 0.014
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +3

Query: 117 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFCKVC 278
           P C  C  +  A   R+      +G   +H+ CF+C  C+K +  +N       +FC  C
Sbjct: 69  PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 123 CPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSE--HEGELFCKVCH 281
           C  CG    A ++ ++    W K C  CG+   +  +  CSE    G   C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 90  TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCSEHEGELFC 269
           T+P      P+C  CG++ + A E   G +     C+ C   Q    ++ C+E + E  C
Sbjct: 8   TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60

Query: 270 KVC 278
             C
Sbjct: 61  YAC 63


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 100 SNQQTTRSARNAGNQFTRPRSELPVGSNGTKCASNAVCARSYWIRPTAQNT 252
           +N  +T +  N+G  F +P +    GSN T   S+++   +   +P A NT
Sbjct: 213 TNNASTSTTANSGFSFGKPATTSAPGSNTTVTPSSSITGTND-SKPAASNT 262


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 277 HTLQNSSPSCSEQLVESNNFWHIPHLKHIL 188
           HT   + PSCS Q         IPH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 232 ESNNFWHIPHLKHILCHLSPP 170
           E++N++  P L+H LCH +PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 437 CWLAEMRVGDPQPLLDGSSRSIRIGF 360
           C LA      P P +DG++ SI +GF
Sbjct: 73  CKLASSISSSPSPKIDGTAASIGMGF 98


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 SVYAAEERVAGGLKWHKMCFKCGMCQKLLDSTNCS 245
           SVY A+++    L+WH      G+   L  ST  S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,001
Number of Sequences: 5004
Number of extensions: 40504
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)