Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I01
         (407 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F2C4BF Cluster: PREDICTED: similar to interferon...    32   5.1  
UniRef50_A3I0X8 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  

>UniRef50_UPI0000F2C4BF Cluster: PREDICTED: similar to
           interferon-gamma-inducible p47 GTPase; n=1; Monodelphis
           domestica|Rep: PREDICTED: similar to
           interferon-gamma-inducible p47 GTPase - Monodelphis
           domestica
          Length = 538

 Score = 31.9 bits (69), Expect = 5.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 241 LSNLPGLNLLQSKTGLTFQSLYHNSYNFFWELLSTNF*FNDSN 369
           L +LPG+     +  L  + +  NSY+FF+ + ST F  ND+N
Sbjct: 159 LWDLPGIGTPNFQPKLYLEQVNFNSYDFFFIVSSTRFRDNDAN 201


>UniRef50_A3I0X8 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 533

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 244 SNLPGLNLLQSKTGLTFQSLYHNSYNFFWE 333
           +NLPG N  Q+ T  T +++Y + +N  WE
Sbjct: 482 NNLPGSNSYQTATYQTKRNVYRSPFNLIWE 511


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,425,823
Number of Sequences: 1657284
Number of extensions: 4347159
Number of successful extensions: 9153
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9153
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)