Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I01
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   3.4  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    25   4.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    24   7.9  

>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 290 VNPVLLCNKLSPGKLLNMNRH-VLKIGRSFA 201
           VNP ++  KL PG+ +++  H +L IG+  A
Sbjct: 194 VNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 224


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 389 KNDHYNVLESLN*KLVDNNSQKKLYELWYRLWKVNPVLLCNKLSPGKL-LNMNRHV 225
           K+ +  + ++L+         K+L EL +RL +++     NKL+  KL  NM++H+
Sbjct: 31  KSPNTEITQALSSSYEAEEKAKQLKELDFRLQQLSSFCEWNKLAFEKLAANMDKHL 86


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 365 ESLN*KLVDNNSQKKLYELWYRLWKVNPVLLCNK 264
           +S++  L D+ SQ +LY+  Y+L+K   + +  K
Sbjct: 745 KSISKLLADHQSQVQLYQSCYKLFKNESISMAIK 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,743
Number of Sequences: 5004
Number of extensions: 20067
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)