Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I01
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1378 + 26536082-26537803                                         33   0.087
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717...    27   7.6  
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    27   7.6  

>08_02_1378 + 26536082-26537803
          Length = 573

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 136 GAAFLPFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAA 14
           G+AFLP     CAFL       PL+L ++   A+CS+A  A
Sbjct: 111 GSAFLPALASACAFLVARSHRLPLSLAEAAETAFCSVASLA 151


>04_01_0559 -
           7175828-7176195,7176262-7176973,7178028-7178201,
           7178814-7178891
          Length = 443

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 265 LLQSKTGLTFQSLYHNSYNFFWELLSTNF*FNDS 366
           L + + G++F+  +H  Y   W+ LST   F+DS
Sbjct: 105 LKEIEDGISFR-FFHKKYTLTWKSLSTLLGFHDS 137


>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 241 LSNLPGLN-LLQSKTGLTFQSLYHNSYN 321
           L NLP  + L+ SKT  T QS YHN  N
Sbjct: 745 LYNLPAESCLVSSKTTRTNQSKYHNGQN 772


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,553,046
Number of Sequences: 37544
Number of extensions: 108198
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)