Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I01
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    29   0.98 
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
            protein Y18D10A.7c protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +2

Query: 305  TTIRIIFFGSCYQLIFNSMILIHCN---DHFLTTN 400
            T + +I FG+ + L+F  ++L++C+   D+F TT+
Sbjct: 896  TVVLVILFGTTHALVFLPLLLMNCHRVFDYFKTTS 930


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 338 YQLIFNSMILIHCND 382
           YQ  FNS++  HCND
Sbjct: 373 YQAEFNSLVQTHCND 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,940,607
Number of Sequences: 27780
Number of extensions: 107275
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)