Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_I01
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    20   9.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    20   9.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 331 PKKNYTNCGTDF 296
           P+ N T CGTD+
Sbjct: 195 PEGNMTACGTDY 206


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 331 PKKNYTNCGTDF 296
           P+ N T CGTD+
Sbjct: 71  PEGNMTACGTDY 82


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 343 LITTPKKNYTNCGTDFGKSIPFYFVIN*VQV 251
           +I++   NY N   ++     +Y +IN  Q+
Sbjct: 303 IISSNNYNYKNYNNNYNSKKLYYNIINIEQI 333


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 343 LITTPKKNYTNCGTDFGKSIPFYFVIN*VQV 251
           +I++   NY N   ++     +Y +IN  Q+
Sbjct: 314 IISSNNYNYKNYNNNYNSKKLYYNIINIEQI 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,894
Number of Sequences: 438
Number of extensions: 1600
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)