Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H23
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   161   7e-41
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      29   0.66 
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    28   1.2  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    28   1.2  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   1.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.1  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   8.1  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  161 bits (391), Expect = 7e-41
 Identities = 91/188 (48%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
 Frame = +3

Query: 45  GMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETD-EDMVTEIKLKYFDTVPVASAMCVL 221
           G + V +  HK K  FF+L QT  GD+ K+TIE D +  V E++LKYFDTVP+A  + +L
Sbjct: 302 GPLIVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNIL 361

Query: 222 KTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSS----AMPLEEG-DTFFFAPRPLRNLVL 386
           KTGFLFVA EFGNH LYQ  +LG +DDE E +S    A   E G     F  R L+NL L
Sbjct: 362 KTGFLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSL 421

Query: 387 VDEMDSLSPVLACHV--ADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSELPGS 560
           V+E+ SL  +    +  A  +GE   Q+Y  CGRG  SS+R LR GLE  E+  SELPG+
Sbjct: 422 VEEIPSLYSLTDTLLMKAPSSGE-ANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGA 480

Query: 561 ANAVWTVR 584
             A+WT++
Sbjct: 481 PIAIWTLK 488


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = -3

Query: 305  FIIFISQMSDLI*IMIPKFTCHK*ESSFQNTHSRGNRHSVKVFKFYFSDHIFISFNCYFK 126
            FII I    +L+ I++   T    E+++QN  +  +  + + +   F D IF       K
Sbjct: 1221 FIIRIQNGLNLLEILVKPVTDSD-EAAWQNLLAEESEKNARNYDL-FDDSIFSMSFAELK 1278

Query: 125  YVSLLSLCQKEKHGF 81
            Y +L ++ + EK GF
Sbjct: 1279 YTALSNIVEMEKLGF 1293


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 430 TWQANTGDRESISSTSTR-FLNGRGAKKNVSPSSKGIAE 317
           T  A T  ++++   S + +  GRGA  N+ PSS G A+
Sbjct: 177 TVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 182 VFKFYFSDHIFISFNCYFKYVSLLSLCQKEKHGFCFV 72
           V K +F  H    F C+ K   L++ CQ++ + + F+
Sbjct: 162 VLKEWFPMHASTEFRCFVKSKRLIAFCQRDDNYYEFL 198


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 430 TWQANTGDRESISSTSTR-FLNGRGAKKNVSPSSKGIAE 317
           T  A T  ++++   S + +  GRGA  N+ PSS G A+
Sbjct: 177 TVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 472 AKYTCGVSSPAKSATWQANTGDRESISSTST 380
           A Y   V+SP +  TWQ+   +  + SS ST
Sbjct: 17  AAYAVSVTSPTRDTTWQSGQVNTVTWSSVST 47


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 96  FLAQTEQGDIFKI-TIETDEDMVTEIKLKYFDTVPVASAMCVLKTGFLFVACEFGNHYLY 272
           ++   E G ++K   + TDE +  E  L+      +AS +  L    LFV   F N  L 
Sbjct: 279 YIVADESGMLYKFKALFTDETVSME--LEKLGESSIASCLIALPDNHLFVGSHFNNSVLL 336

Query: 273 QI 278
           Q+
Sbjct: 337 QL 338


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 369 LRNLVLVDEMDSLSPVLACHVADLAGEDTPQVYLACGRGPR-SSIRALRHGLEVAEMAVS 545
           L NL  + ++DS+  +   H   +   D  + +L C   PR +S+   +H L++  +  +
Sbjct: 327 LINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNASLIYFQHALKLDILGQT 386

Query: 546 ELPGSANAV 572
           ++ G   A+
Sbjct: 387 KISGILRAM 395


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 369  LRNLVLVDEMDSLSPVLACHVADLAGEDTPQVYLACGRGP 488
            LRN +L DEM +   +L   +      D+ +V   C R P
Sbjct: 1071 LRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREP 1110


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 MVTEIKLKYFDTVPVASAMCVLKT 227
           + TE ++K FD+ P    MC++ T
Sbjct: 711 LTTEDQMKVFDSSPEGHRMCIVAT 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,200
Number of Sequences: 5004
Number of extensions: 56812
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)