Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H23
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 218 2e-57
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 43 2e-04
10_08_1055 + 22587122-22587501,22587578-22588097 33 0.22
05_05_0226 + 23442971-23443857,23444209-23446324 30 1.2
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 29 3.6
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 28 4.8
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 28 4.8
12_01_0263 + 1925924-1926319,1926565-1927143 28 6.3
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 28 6.3
04_04_1487 - 33919654-33920399,33920676-33920817 28 6.3
03_02_0371 + 7858170-7859624 27 8.3
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 27 8.3
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 218 bits (533), Expect = 2e-57
Identities = 106/192 (55%), Positives = 138/192 (71%), Gaps = 2/192 (1%)
Frame = +3
Query: 15 RRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFDTV 194
RR DL ERG++ V +ATH+ KS+FFFL QTE GDIFK+ +E D VTE+++KYFDT+
Sbjct: 287 RRADLP-AERGVLIVAAATHRQKSLFFFLLQTEYGDIFKVDLEHSNDTVTELRIKYFDTI 345
Query: 195 PVASAMCVLKTGFLFVACEFGNHYLYQIAHLG-DEDDEPEFSSAMPLEEG-DTFFFAPRP 368
PV SA+CVL++GFLF A EFGNH LYQ +G D D E ++ M +EG FF PR
Sbjct: 346 PVTSAICVLRSGFLFAASEFGNHALYQFRDIGRDVDVESSSATLMETDEGFQPVFFQPRA 405
Query: 369 LRNLVLVDEMDSLSPVLACHVADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSE 548
L+NL +DE++SL P++ VA+L E+TPQV+ ACGRGPRS++R LR GL ++EMA S
Sbjct: 406 LKNLYRIDEIESLMPIMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSM 465
Query: 549 LPGSANAVWTVR 584
LP AVWTV+
Sbjct: 466 LPAEPIAVWTVK 477
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 378 LVLVDEMDSLSPVLACHVADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSE-LP 554
LV + +++P+L +AD GE Q++ CG P S+R +R+G+ V ++ ++ +
Sbjct: 471 LVHKSAIQNVAPILDLAIADHHGEKQDQMFACCGMCPEGSLRVIRNGVNVEKLLRTDPIY 530
Query: 555 GSANAVWTVR 584
+WT+R
Sbjct: 531 HGVTGLWTLR 540
>10_08_1055 + 22587122-22587501,22587578-22588097
Length = 299
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 585 DELSIQHWLNQVVLIQPSLLLPDHVSMLLLMIVALDHKLNILVECPHQLNL 433
D L+ H + V+I PSLL PDH L I+ H L + PH L
Sbjct: 249 DRLTTTHLKQEDVIISPSLLQPDHHQ--LCTIIDTKHHLLFHQDYPHSFGL 297
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +3
Query: 204 SAMCVLKTGFLFVA--CEFGNHYLYQIAHLGDEDDE----PEFSSAMPLEEGDTFFFAPR 365
S+ +L T VA C GN Y+YQ+ LG+ED + P F S LE+G
Sbjct: 322 SSRIILTTTIQSVANMCSHGNGYVYQMNTLGEEDSKELAFPGFRSP-ELEQGSASLLGKC 380
Query: 366 PLRNLVLVDEMDSL 407
L LV D L
Sbjct: 381 DGLPLALVSVSDYL 394
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 430 TWQANTGDRESISSTSTR-FLNGRGAKKNVSPSSKGIAE 317
T A T ++++ S + + GRGA +N+ PSS G A+
Sbjct: 254 TVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAK 292
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 48 MIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 188
++F C+ KT S+ F + + DIF+ D V + + FD
Sbjct: 613 VVFTCNGKSKTSSIKFQTLEPQWNDIFEFDAMDDPPSVMNVHVYDFD 659
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 430 TWQANTGDRESISSTSTR-FLNGRGAKKNVSPSSKGIAE 317
T A T ++++ S + + GRGA +N+ PSS G A+
Sbjct: 313 TVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAK 351
>12_01_0263 + 1925924-1926319,1926565-1927143
Length = 324
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 291 DEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPVLACHVADLAGEDTPQ 461
D+DD E + GDT FA V D+ + VL A +AG D P+
Sbjct: 9 DDDDVGESTDEFANPSGDTMEFAKPVYLVAVRDDDQAAAYSVLKIDAAAVAGNDEPR 65
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = -1
Query: 562 AEPGSSDTAISATSRPCLNALIDDRGPRPQAKYTCGVSSPAKSATWQANTGDRESISSTS 383
+E +S + SR L +L D P A V +PA +A A R +
Sbjct: 248 SEASASSPRTTTASRRSLPSLTSDFFPTTPA--AAPVPAPAAAAPPPAPPAPRSRRTPPR 305
Query: 382 TRFLNGRGAKKNVSPSS 332
TRF G GA+ N +S
Sbjct: 306 TRFSAGSGAEMNKQMAS 322
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 546 LIQPSLLLPDHVSMLLLMIVALDHKLNILVECP 448
L+ P LLLP + +LLL+++ L L + + CP
Sbjct: 14 LLLPPLLLPLLLLLLLLLLLLLSLSLVLCLNCP 46
>03_02_0371 + 7858170-7859624
Length = 484
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 451 SSPAKSATWQANTGDRESISSTSTRFLNGRG 359
SSP+ +ATW +++ +S R NGRG
Sbjct: 88 SSPSAAATWGGAAWEKKVRASARVRRANGRG 118
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -1
Query: 550 SSDTAISATSR-PCLNALIDDRGPR--PQAKYTCGVSSPAKSATWQANTGDRESISSTS 383
SS I +R P +N L PR P + Y V P +A WQ+ S+S TS
Sbjct: 517 SSQHRIGLNNRTPIINRLKPPVPPRRRPSSVYAESVMVPVNAAPWQSECSSECSMSLTS 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,391
Number of Sequences: 37544
Number of extensions: 360832
Number of successful extensions: 1010
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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