Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H23
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   264   2e-71
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q (ub...    29   1.8  
Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-relat...    27   7.4  
AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase prote...    27   7.4  
AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  264 bits (648), Expect = 2e-71
 Identities = 120/192 (62%), Positives = 154/192 (80%)
 Frame = +3

Query: 9   PRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDMVTEIKLKYFD 188
           PRRRN+LDD +R M+ + +ATHKTK+M+FFL Q E GDIFK+T+ETDED+V+E+KLKYFD
Sbjct: 273 PRRRNELDDADRTMLIIATATHKTKNMYFFLVQAENGDIFKVTLETDEDLVSEMKLKYFD 332

Query: 189 TVPVASAMCVLKTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRP 368
           TVP A+A+C+LK+GFLFVA EFGNH LYQIA LG+ DD+ EFSSAM   E D  FF P  
Sbjct: 333 TVPPANALCILKSGFLFVAAEFGNHELYQIASLGEGDDD-EFSSAMGFGENDAAFFEPHE 391

Query: 369 LRNLVLVDEMDSLSPVLACHVADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSE 548
           L++L+ +D MDSLSP+    + D+A ED  Q+Y   GRG RSS++ LR+GLE++EMAVS+
Sbjct: 392 LKSLIPIDSMDSLSPLTDAVIGDIAREDAAQIYSLVGRGARSSLKVLRNGLEISEMAVSD 451

Query: 549 LPGSANAVWTVR 584
           LPG+ NAVWTV+
Sbjct: 452 LPGNPNAVWTVK 463


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 423 CHVADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSELPGSANAVWTV 581
           C+V +L    +    +AC R   SSI    H L++A++ + E     N  +T+
Sbjct: 285 CNVLNLLLRHSKAAIVACTRRNESSIECFEHHLKMAKLEIVEKFEYENGAYTI 337


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -1

Query: 529 ATSRPCLNALIDDRGPRPQAKYTCGVSSPAKSATWQANTGDRESISSTSTRFLNGRGAKK 350
           +TS   L  L+     RP+ +Y   VSSP K +  +A     ES+ +  TR L  R  K+
Sbjct: 183 STSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKA----IESVQNAFTRRLYSRIKKR 238

Query: 349 NVSPSSK 329
            ++P+ K
Sbjct: 239 YINPTDK 245


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 4/172 (2%)
 Frame = +3

Query: 54  FVCSATHKTKSMFFFLAQTEQGDIFKITIETDEDM----VTEIKLKYFDTVPVASAMCVL 221
           F C          F L+ T+ G +  + +   E      V E+++ Y     +A ++  +
Sbjct: 256 FTCHGIVDASGERFLLSDTD-GRLLMLLLNVTESQSGYTVKEMRIDYLGETSIADSINYI 314

Query: 222 KTGFLFVACEFGNHYLYQIAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMD 401
             G +FV    G+  L ++        EP   S   + E    +    P+R++V+V E D
Sbjct: 315 DNGVVFVGSRLGDSQLIRLM------TEPNGGSYSVILET---YSNIGPIRDMVMV-ESD 364

Query: 402 SLSPVLACHVADLAGEDTPQVYLACGRGPRSSIRALRHGLEVAEMAVSELPG 557
               ++ C  AD  G                S+R +R+G+ + E+A  +L G
Sbjct: 365 GQPQLVTCTGADKDG----------------SLRVIRNGIGIDELASVDLAG 400


>U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 4 protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 111 EQGDIFKITIETDEDMVTEIKLKYFDTVPVASAMCVLKTGFLF 239
           E  D   I +E   +M+ E+ +KYF+ +     MCV  TG +F
Sbjct: 131 ETHDFTHIALEQKTNMLGEVTVKYFEGIQYGLPMCV--TGGIF 171


>Z72506-3|CAA96617.1|  310|Caenorhabditis elegans Hypothetical
           protein F07A5.2 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 484 PRPQAKYTCGVSSPAKSATWQANTGDRESISSTSTRFLN-GRGAKKNVSPSSKG 326
           P P  K+T G++SP K    + +     S++S S RF + G    K    SS G
Sbjct: 223 PTPMKKHTPGINSPRKRPLRRESI---SSVNSKSVRFTDEGSSFSKRARKSSSG 273


>Z81074-11|CAB03045.2|  562|Caenorhabditis elegans Hypothetical
           protein F32B6.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 401 IHFIDKHKIPQWPWSKEECISFF*RHS*TKLRF 303
           +H ID     QW WSKE+  +F+ R   TK++F
Sbjct: 229 VHVIDFGLTRQWAWSKEK--AFYARPLRTKVQF 259


>AF088288-1|AAC98295.1|  826|Caenorhabditis elegans caspase-related
           protein 2A protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 562 AEPGSSDTAISATSRPCLNALIDDRGPRPQAKYTCGVSSPAKSATWQANTGDRES 398
           A+PG + ++ S T  P  NA      P PQA  T   + P  + +  + T D  S
Sbjct: 491 ADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTSSSSLTQDPAS 545


>AC084197-7|AAM44398.1|  826|Caenorhabditis elegans Caspase protein
           2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 562 AEPGSSDTAISATSRPCLNALIDDRGPRPQAKYTCGVSSPAKSATWQANTGDRES 398
           A+PG + ++ S T  P  NA      P PQA  T   + P  + +  + T D  S
Sbjct: 491 ADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTSSSSLTQDPAS 545


>AF038611-2|AAB92037.1|  224|Caenorhabditis elegans Hypothetical
           protein E04A4.2 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 21  NDLDDPERGMIFVCSATHKTKSMFFFLAQTE 113
           N  DDP +    +C   H+T   +FF AQ E
Sbjct: 62  NPFDDPIQMNAVLCQNLHETSLKWFFKAQPE 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,193
Number of Sequences: 27780
Number of extensions: 318135
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)