Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H22
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 126 8e-30
04_04_0143 - 23091613-23092467 125 1e-29
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 118 2e-27
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 85 2e-17
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 73 1e-13
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 53 1e-07
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 33 0.10
05_05_0370 + 24466565-24468031 29 2.2
03_05_0602 - 26042832-26044295 29 2.2
12_02_0352 - 17862577-17863528,17864076-17864827 28 3.8
06_03_0385 - 20234160-20234798,20234888-20235238 28 3.8
06_01_0116 - 907995-908813,909002-909286 28 3.8
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 27 5.0
09_02_0477 - 9737851-9739356 27 5.0
08_02_1198 + 25204896-25206755 27 5.0
06_01_0201 - 1546455-1546652,1547124-1547201,1548217-1548402,154... 27 5.0
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 27 6.6
03_02_0751 + 10919768-10920282,10920518-10920710,10920796-109209... 27 6.6
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 27 8.7
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 27 8.7
07_03_1726 - 29062654-29064414 27 8.7
07_01_0295 + 2144267-2144517,2144795-2145776 27 8.7
>02_04_0362 - 22366668-22367516
Length = 282
Score = 126 bits (304), Expect = 8e-30
Identities = 58/109 (53%), Positives = 76/109 (69%)
Frame = +1
Query: 109 TALAKWDXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPII 288
T LA+ ++ALY VDGG RAVIFDRF GV + EGTHF +PW+QKP I
Sbjct: 13 TKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFI 72
Query: 289 FDIRSRPRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYD 435
FDIR+RP + + +G+KDLQ V++TLR+L RP D+LP I+T LG++YD
Sbjct: 73 FDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYD 121
>04_04_0143 - 23091613-23092467
Length = 284
Score = 125 bits (302), Expect = 1e-29
Identities = 58/109 (53%), Positives = 74/109 (67%)
Frame = +1
Query: 109 TALAKWDXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPII 288
T +AK +++LY VDGG RAVIFDRF GV GEGTHF +PW+QKP +
Sbjct: 12 TNIAKAAAGLGAAASLLSASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFV 71
Query: 289 FDIRSRPRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILGVDYD 435
FDIR+RP N + +G+KDLQ VN+TLR+L RP LP I+T LG++YD
Sbjct: 72 FDIRTRPHNFSSNSGTKDLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYD 120
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 118 bits (285), Expect = 2e-27
Identities = 49/91 (53%), Positives = 72/91 (79%)
Frame = +1
Query: 163 SALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKD 342
++LYNV+GGHRA++F+R G+K+ V EGTHF IPW ++PII+D+R+RP V + +GS+D
Sbjct: 29 NSLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRD 88
Query: 343 LQNVNITLRILFRPVPDQLPKIYTILGVDYD 435
LQ V I LR+L RP+P++LP IY LG +++
Sbjct: 89 LQMVRIGLRVLTRPLPEKLPTIYRSLGENFN 119
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 85.4 bits (202), Expect = 2e-17
Identities = 35/64 (54%), Positives = 50/64 (78%)
Frame = +1
Query: 244 EGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILG 423
EGTHF IPW ++PII+D+R+RP V + +GS+DLQ V I LR+L RP+P++LP IY LG
Sbjct: 134 EGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKLPTIYRTLG 193
Query: 424 VDYD 435
+++
Sbjct: 194 ENFN 197
Score = 38.7 bits (86), Expect = 0.002
Identities = 13/23 (56%), Positives = 21/23 (91%)
Frame = +1
Query: 163 SALYNVDGGHRAVIFDRFAGVKN 231
++LYNV+GGHRA++F+R G+K+
Sbjct: 35 NSLYNVEGGHRAIVFNRIQGIKD 57
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 72.5 bits (170), Expect = 1e-13
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = +1
Query: 244 EGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKDLQNVNITLRILFRPVPDQLPKIYTILG 423
EGT F I ++PII+D+R+RP V + +GS+DLQ V I LR+L RP+P++LP IY LG
Sbjct: 221 EGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTIYRSLG 280
Query: 424 VDYD 435
+++
Sbjct: 281 ENFN 284
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKDLQNVNITLRI 372
R + ++ + L+ E +HF IPW ++ IFD+ RP V + +GS+DLQ V L +
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 373 LFRPVP 390
L RP+P
Sbjct: 383 LTRPLP 388
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 33.1 bits (72), Expect = 0.10
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +1
Query: 82 EKDGSTVVQTALAKWDXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFF 261
E+ G ++A+ +W+ +S L+ V GH V + R + +T G H
Sbjct: 128 EEVGGLEGRSAMCRWEKEIEISFSAPSSILHQVPEGHVGVYW-RGGALLETITPPGFHVK 186
Query: 262 IPWVQKPIIFDIRSRP 309
+PW+ + +R+ P
Sbjct: 187 LPWITQFEPIQVRNIP 202
>05_05_0370 + 24466565-24468031
Length = 488
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 178 HCRVQNLTTPPTRAIPSPTWPMRFEQLCCHLFLS 77
HC ++ T +P TWP+ FEQ F++
Sbjct: 360 HCGWNSMLEGATAGVPLLTWPLVFEQFITERFVT 393
>03_05_0602 - 26042832-26044295
Length = 487
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 178 HCRVQNLTTPPTRAIPSPTWPMRFEQLCCHLFL 80
HC ++ + +P TWP+R EQ +FL
Sbjct: 360 HCGWNSILDAISAGVPLATWPLRAEQFLNEVFL 392
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 199 LLCDHHQHCRVQNLTTPPTRAIP-SPTWP 116
L C HQH + ++ T P+ A P S T+P
Sbjct: 299 LCCTEHQHSHLDDMGTSPSPATPLSTTYP 327
>06_03_0385 - 20234160-20234798,20234888-20235238
Length = 329
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 271 VQKPIIFDIRSRPRNVPTVTGSKDLQNVNITLRILFRPVPDQLP 402
V PII D++ P + T G+ + +IT RI P P P
Sbjct: 271 VANPIIIDMKYCPNKICTANGNSKVTIKDITSRISPAPPPRPRP 314
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 323 VGTFLGLDRISKIIGFCTHGMKKWVPSPVTKFFTPANLSKIT 198
VGT + + + +IG CT +K+ VP K A+L I+
Sbjct: 310 VGTVVAMGSYTVLIGSCTEALKERVPRITEKLTWAASLVAIS 351
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 199 VIFDRFAGVKNLVTG--EGTHFFIPWVQKPIIFDIRSR--PRNVPTVTGSKDLQNVNITL 366
V+ + +G K L TG +G + W I ++ N+PT + ++ + +
Sbjct: 585 VLLELISGKKPLCTGCPKGQESLVMWANSIIQGGKLTQLVDPNLPTEDHANKVERMTLAA 644
Query: 367 RILFRPVPDQLPKIYTIL 420
+ RP P + P I +L
Sbjct: 645 SLCIRPTPQRRPHIAVVL 662
>09_02_0477 - 9737851-9739356
Length = 501
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 217 QIYQRLLLCDHHQHCRVQNLTTPPTRAIPSPTWPMRFEQ 101
QI Q + HC ++ T +P WPM F+Q
Sbjct: 374 QILQHKSVRGFLSHCGWNSVLESVTAGVPLAVWPMNFDQ 412
>08_02_1198 + 25204896-25206755
Length = 619
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 199 LLCDHHQHCRVQNLTTPPTRAIPSPTWP 116
LL QHC Q P + +P P WP
Sbjct: 180 LLSSLMQHCSPQQRKYPLDKGVPPPWWP 207
>06_01_0201 -
1546455-1546652,1547124-1547201,1548217-1548402,
1548909-1548919,1549256-1549568
Length = 261
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 238 LPNSLHQQIYQRLLLCDHHQHCRVQNLTTPPTRAIPSPTWPMRFEQLCCHLFLSFTILA 62
L NSLHQ ++ DH +T+PPT +R + CC L+ T LA
Sbjct: 107 LVNSLHQPKEDPVVTLDHIFGVEPMKITSPPTD--NEIALALRVLEGCCLLYSRCTALA 163
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 278 FCTHGMKKWVPSPVTKFFTPANLSKITAL*PP 183
FC HG+ +P P+ + + L+K T + P
Sbjct: 183 FCPHGLTCMIPCPLGAYCPESTLNKTTGICDP 214
>03_02_0751 +
10919768-10920282,10920518-10920710,10920796-10920986,
10921148-10921306,10921390-10921720
Length = 462
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 178 HCRVQNLTTPPTRAIPSPTWPMRFEQLCCHLFLSFTIL 65
HCR L TR P P M EQ+ + S TIL
Sbjct: 362 HCRESTLPLSDTRVRPVPEINMILEQVAQQMKTSVTIL 399
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 278 FCTHGMKKWVPSPVTKFFTPANLSKITAL*PP 183
FC HG+ +P P+ + ++L+K T + P
Sbjct: 204 FCPHGLTCMIPCPLGAYCPLSSLNKTTGICDP 235
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 202 LLLCDHHQHCRVQNLTTPPTRAIPSPTWPM 113
L LC H RV PP A P+PT P+
Sbjct: 349 LALCVPAPHPRVPRAPAPPVPAPPAPTPPI 378
>07_03_1726 - 29062654-29064414
Length = 586
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 235 PNSLHQQIYQRL--LLCDHHQHCRVQNLTTPPTRAIPSPTWP 116
P+SLH+ L LL QHC P + +P P WP
Sbjct: 210 PHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWP 251
>07_01_0295 + 2144267-2144517,2144795-2145776
Length = 410
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +1
Query: 91 GSTVVQTALAKWDXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKNL--VTGEGTHF-- 258
G+T T+LA+ A +V GG V F GV + +TG+ T +
Sbjct: 56 GTTTTSTSLAESSGIGGRLVQDQEEAGSSVLGGSYIVPFPNGHGVLDHDGLTGKATPYEP 115
Query: 259 ---FIPWVQKPIIF 291
+IPW++ P +F
Sbjct: 116 PPSWIPWIESPSLF 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,772
Number of Sequences: 37544
Number of extensions: 284855
Number of successful extensions: 768
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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