Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H22
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 156 6e-39
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 101 2e-22
Z83233-5|CAB05765.2| 340|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 29 2.0
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 28 2.6
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 28 2.6
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 28 2.6
Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical pr... 28 3.4
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 28 3.4
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 28 3.4
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 28 3.4
AC024801-3|AAK68511.3| 852|Caenorhabditis elegans Hypothetical ... 27 4.5
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 27 4.5
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 27 4.5
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 27 4.5
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 27 6.0
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 27 6.0
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 27 6.0
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 27 6.0
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 27 7.9
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 156 bits (379), Expect = 6e-39
Identities = 72/90 (80%), Positives = 78/90 (86%)
Frame = +1
Query: 163 SALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKD 342
+ALYNVDGG RAVIFDRF+GVKN V GEGTHF IPWVQKPIIFDIRS PR V T+TGSKD
Sbjct: 28 TALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKD 87
Query: 343 LQNVNITLRILFRPVPDQLPKIYTILGVDY 432
LQNVNITLRIL RP PD+LP IY +G+DY
Sbjct: 88 LQNVNITLRILHRPSPDRLPNIYLNIGLDY 117
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 101 bits (242), Expect = 2e-22
Identities = 45/90 (50%), Positives = 63/90 (70%)
Frame = +1
Query: 166 ALYNVDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPTVTGSKDL 345
+++ V+ GHRA++F+R G+ + EG HF IPW Q PII+DIR+RP + + TGSKDL
Sbjct: 39 SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98
Query: 346 QNVNITLRILFRPVPDQLPKIYTILGVDYD 435
Q VNI LR+L RP P+ L IY LG +++
Sbjct: 99 QMVNIGLRVLSRPNPEHLVHIYRTLGQNWE 128
>Z83233-5|CAB05765.2| 340|Caenorhabditis elegans Hypothetical
protein K06B4.5 protein.
Length = 340
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 229 SLHQQIYQRLLLCDHHQHCRVQNLTTPPTR 140
S HQ++Y LL QHC+ N T PTR
Sbjct: 256 SFHQKVYSSALL----QHCQFTNSRTAPTR 281
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 28.7 bits (61), Expect = 2.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 265 PWVQKPIIFDIRSRPRNVPTVTG 333
P +Q ++ D +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 28.3 bits (60), Expect = 2.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 336 ASSNGGHISWSRPDIENNWFLYPWYEEVGALTGYQILYTSKSIKDYCSVTTINIVECR-I 160
+S +G +++W R + W L+ E V + IL TS D+ S + + E R I
Sbjct: 404 SSQDGHYVAWMRSSEDGKWRLFD-DEHVTVVDEEAILKTSGG-GDWHSAYVL-LYEARVI 460
Query: 159 *QLHQLEPYPVP 124
Q +L P PVP
Sbjct: 461 KQFPELPPAPVP 472
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 28.3 bits (60), Expect = 2.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 336 ASSNGGHISWSRPDIENNWFLYPWYEEVGALTGYQILYTSKSIKDYCSVTTINIVECR-I 160
+S +G +++W R + W L+ E V + IL TS D+ S + + E R I
Sbjct: 404 SSQDGHYVAWMRSSEDGKWRLFD-DEHVTVVDEEAILKTSGG-GDWHSAYVL-LYEARVI 460
Query: 159 *QLHQLEPYPVP 124
Q +L P PVP
Sbjct: 461 KQFPELPPAPVP 472
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 28.3 bits (60), Expect = 2.6
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -3
Query: 336 ASSNGGHISWSRPDIENNWFLYPWYEEVGALTGYQILYTSKSIKDYCSVTTINIVECR-I 160
+S +G +++W R + W L+ E V + IL TS D+ S + + E R I
Sbjct: 404 SSQDGHYVAWMRSSEDGKWRLFD-DEHVTVVDEEAILKTSGG-GDWHSAYVL-LYEARVI 460
Query: 159 *QLHQLEPYPVP 124
Q +L P PVP
Sbjct: 461 KQFPELPPAPVP 472
>Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical
protein C05E7.3 protein.
Length = 156
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 178 VDGGHRAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPTV 327
+ GG FDRF K + GE I W ++ +R+ R++P +
Sbjct: 31 IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 1 protein.
Length = 1383
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 321 GHISWSRPDIENNWFLYPWYEEV--GALTGYQILYTSKS 211
G + W RPD++N + +P + G + Y + +T ++
Sbjct: 915 GELDWHRPDVQNKFCTFPGCSDTSFGNIMNYAVGHTEQT 953
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPT-VTGSKDLQNVNITLR 369
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 370 ILFR 381
+ F+
Sbjct: 131 VYFK 134
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNVPT-VTGSKDLQNVNITLR 369
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 370 ILFR 381
+ F+
Sbjct: 131 VYFK 134
>AC024801-3|AAK68511.3| 852|Caenorhabditis elegans Hypothetical
protein Y50D7A.4 protein.
Length = 852
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 269 GYRNQLFSISGLDQEMCPPLLEAKIFKM*TSHFVYCS-DQCLINYL 403
GY N S+ G DQE PP ++ + + HF C Q +NY+
Sbjct: 363 GYGN--VSLDGKDQECEPPTTALWLYVLASHHFDRCGMTQLALNYI 406
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNV-PTVTGSKDLQNVNITLR 369
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 58 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 117
Query: 370 ILFR 381
I FR
Sbjct: 118 IYFR 121
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNV-PTVTGSKDLQNVNITLR 369
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 370 ILFR 381
I FR
Sbjct: 202 IYFR 205
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 193 RAVIFDRFAGVKNLVTGEGTHFFIPWVQKPIIFDIRSRPRNV-PTVTGSKDLQNVNITLR 369
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 370 ILFR 381
I FR
Sbjct: 202 IYFR 205
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 185 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 224
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 180 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 219
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 185 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 224
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 180 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 219
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 185 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 224
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 249 HPLLHTMGTETNYFRYPV*TKKCAHRY--WKQRSSKCKHH 362
HP +HT+ E N +P+ ++CA W K + H
Sbjct: 180 HPAVHTVSCEINIRHFPLDDQRCAIEIASWAYGQEKIRLH 219
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 98 VLPSFSEFYDSCNVIIILNVKYGFYYF 18
+ P F+ FY S I I+N Y Y+F
Sbjct: 44 IFPVFNHFYKSIKKIQIVNAIYILYFF 70
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 259 RSGCPHRLP----NSLHQQIYQRLLLCDHHQHCRVQNLTTPPTRAIPSPTWP 116
+ G P R P N QQ ++ QH ++Q++ PP + P P P
Sbjct: 22 QQGVPQRYPGQPMNPYEQQQQHHQMMMMQQQH-QMQHMAPPPQQVPPQPAQP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,964
Number of Sequences: 27780
Number of extensions: 246938
Number of successful extensions: 636
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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