Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H22
(437 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 1.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 4.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 5.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 5.9
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.0 bits (47), Expect = 1.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 190 DHHQHCRVQNLTTPPTRAIPSPTWPMRFEQLCCHLFLSFT 71
D Q C ++++T+ + + P P +P R H F + T
Sbjct: 398 DEDQKCSIESITSVNSTSSPKP-FPRRATLAQLHNFTTMT 436
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 430 MVVDRLCLIVFTLFTVLAT 448
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 498 MVVDRLCLIVFTLFTVLAT 516
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M ++LC +F FT+LAT
Sbjct: 498 MVVDRLCLIVFTLFTVLAT 516
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 4.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 115 MRFEQLCCHLFLSFTILAT 59
M +++C +F FTI+AT
Sbjct: 524 MVIDRMCLIIFTLFTIIAT 542
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 5.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 366 KCDVYILKIFASSNGGHISWSRPDIENN 283
+CD+ LK + WSRP +NN
Sbjct: 1888 ECDIDSLKKLKLGLRSSL-WSRPSTQNN 1914
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.0 bits (42), Expect = 5.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 366 KCDVYILKIFASSNGGHISWSRPDIENN 283
+CD+ LK + WSRP +NN
Sbjct: 1884 ECDIDSLKKLKLGLRSSL-WSRPSTQNN 1910
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,520
Number of Sequences: 438
Number of extensions: 3204
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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