Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H21
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           30   0.26 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.4  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    26   3.2  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   4.2  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   5.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   5.6  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   7.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.7  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 346 LQLIKCTSSELLCSSAKYLCKWDWCSHRL 432
           L + + T++ELL S   YL  W WC  +L
Sbjct: 313 LYICRGTNNELLMSKCIYLKDWKWCGTKL 341


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +2

Query: 2   HEAIFIIIIHLCLLPT*QFCDRNVNSLVVMEPDNDILDFV--KLINVKGSIENIT 160
           H A FII++HL + P+ Q  ++ +N+ +      DIL+FV  +   +KGS + IT
Sbjct: 637 HAASFIILVHLLINPSEQTIEQ-LNTAI------DILNFVTDRFPLLKGSTDVIT 684


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 486 QGYVSVCSIINLSTVVVTQSVRAPIPF 406
           Q +  VC  INL T V+ QS   P+ F
Sbjct: 22  QNFGYVCGSINLGTNVIAQSPTKPLNF 48


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 368 LQNFCVRLQNIYVNGIGALTDCVTTTVDKL 457
           LQ+ C+R+   Y+N I A  D     +DK+
Sbjct: 191 LQDLCIRVIAEYINDIEAFGDIGQVNMDKI 220


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 292 TVSRYGV*RTRNSPNRWPLQLIKCTSSELLCSSAKYLCKWDW 417
           TV R+G  ++ N   R P+QL++  S   L SS       DW
Sbjct: 305 TVERFGTFKS-NLNGRTPVQLVRTPSPASLSSSELINISRDW 345


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 478 ISLYYNKIQRFRSL 519
           IS+Y N+IQ+FRSL
Sbjct: 240 ISIYQNQIQKFRSL 253


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 236  CTVSPKYRKDFCMLALKLIQCPDMEFKELETL 331
            C     Y K F   A KL Q PD+E  + ETL
Sbjct: 996  CPKLKAYEKQFFEKAYKLFQNPDLEVSQ-ETL 1026


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 269 CMLALKLIQCPDMEFKELETLLTDGHYNLLSVHLQN 376
           C+L++  I+C D++F + +   +  H   LS+   N
Sbjct: 253 CLLSVPQIECGDLKFLQTDLPCSGSHNYPLSIANDN 288


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 332 LTDGHYNLLSVHLQNFCVRLQNIYVNGIGAL 424
           L +  + L+S+H  N  V L   YV   GA+
Sbjct: 33  LNNKQFGLMSIHSGNSYVHLHPFYVGDSGAI 63


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 332 LTDGHYNLLSVHLQNFCVRLQNIYVNGIGAL 424
           L +  + L+S+H  N  V L   YV   GA+
Sbjct: 33  LNNKQFGLMSIHSGNSYVHLHPFYVGDSGAI 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,373
Number of Sequences: 5004
Number of extensions: 49597
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)