Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H21
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51... 30 1.4
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 29 1.8
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812... 29 2.4
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 2.4
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 29 2.4
06_03_0700 + 23650275-23650299,23650381-23652350 28 5.6
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 28 5.6
09_01_0134 - 2008793-2009315,2009361-2009423,2009804-2010012,201... 27 9.9
>04_01_0046 +
510721-510790,511048-511121,511459-511729,511865-512243,
512550-512771,513130-513259,514311-514367,514756-515046
Length = 497
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 173 AVVAFIREYGLLKMEAKKLVGCTVSPKYR 259
AV +++EYG+ EAKK + C V ++R
Sbjct: 412 AVECYMKEYGVTVQEAKKALWCLVEEQWR 440
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 549 VSKCTKILLK*RPKTLYLVIIQGYVSVCSI 460
V +C ++ +K R K +Y V +QG + +C++
Sbjct: 576 VKRCVRMAIKLRKKYIYKVYLQGNLYICTV 605
>05_05_0387 +
24577448-24577638,24580375-24580767,24581078-24581208,
24581460-24581899
Length = 384
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 201 PYSRIKATTAIL*GVMFSMLPFTLINFTKSKISLSG-SITTKEFTFLSQN 55
PY+ + +T L G+ +M PF K+K SG ++ KE L N
Sbjct: 60 PYTGYRKSTCFLFGMWLAMWPFLFEKINKTKFVFSGETVPPKERVLLFAN 109
>02_01_0689 +
5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 378 KF*RCTLNKL*WPSV-RRVSSSLNSISGHCISLS 280
KF T NKL WP + RR +++SISG C+ LS
Sbjct: 720 KFDMLTANKLTWPELARRYILAISSISG-CMDLS 752
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 488 YKDMSQYVQLSTYQ-Q*LSHNL*EHQSHLHRYFADEHRSSE 369
++ QY+Q+S Y+ +HN +SH +F D+H+S E
Sbjct: 883 FRGTKQYIQISVYELMDSTHN----KSHRRIWFVDDHKSGE 919
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 27.9 bits (59), Expect = 5.6
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +2
Query: 98 DNDILDFVKLINVKGSIENITPHKIA---VVAFIREYGLLKMEAKKLVGCTVSPKYRKDF 268
D + DF + V S++ +K+ ++AF+ K +A LV C KD
Sbjct: 410 DGRLKDFAESAKVLESLQIEECNKVTLMGILAFLLNCSP-KFKALSLVKCNGI----KDI 464
Query: 269 CMLALKLIQCPDMEFKELETLLTDGHYNLLSVHLQNFCVRLQNIYVNGIGALTD 430
C +L C + ++ +L V + C +L+N+ ++G+GA+TD
Sbjct: 465 CSAPAQLPLCKSLRSLTIKDCPGFTDASLAVVGM--ICPQLENVDLSGLGAVTD 516
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 10 YIYNYYSSLFTTYITILRQKREFLGCDGTG 99
Y+ NY LF T+ + +EF G DGTG
Sbjct: 403 YVINYVKFLFDYQSTLKQLFQEFKGEDGTG 432
>09_01_0134 -
2008793-2009315,2009361-2009423,2009804-2010012,
2010313-2010342,2010430-2010491,2010588-2010771
Length = 356
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 95 PDNDILDFVKLINVKGSIENITPHKIAVVAFIRE 196
PD I D + L+ G++E I + IA+ FI++
Sbjct: 102 PDCSIKDVMALVEECGAVEQINEYFIAIEIFIKK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,235
Number of Sequences: 37544
Number of extensions: 270017
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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