Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H21
         (550 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC042754-1|AAH42754.2|  345|Homo sapiens low density lipoprotein...    31   3.5  
AK075546-1|BAC11689.1|  345|Homo sapiens protein ( Homo sapiens ...    31   3.5  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    29   8.1  
AC093039-1|AAX88911.1|  425|Homo sapiens unknown protein.              29   8.1  
AB209707-1|BAD92944.1| 1720|Homo sapiens low density lipoprotein...    29   8.1  

>BC042754-1|AAH42754.2|  345|Homo sapiens low density lipoprotein
           receptor class A domain containing 3 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 361 CTSSELLCSSAKYLCKWDWCSHR--LCD 438
           CT++ LLCS+A+Y CK   C  +  +CD
Sbjct: 106 CTANPLLCSTARYHCKNGLCIDKSFICD 133


>AK075546-1|BAC11689.1|  345|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0246 fis, clone NT2RP3001359, weakly similar to
           LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2
           PRECURSOR. ).
          Length = 345

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 361 CTSSELLCSSAKYLCKWDWCSHR--LCD 438
           CT++ LLCS+A+Y CK   C  +  +CD
Sbjct: 106 CTANPLLCSTARYHCKNGLCIDKSFICD 133


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358  KCTSSELLCSSAKYLCKWDWC--SHRLCDN 441
            KC S+E  C+S+ ++CK   C  S  LCDN
Sbjct: 2883 KCKSAEQSCNSSFFMCKNGRCIPSGGLCDN 2912


>AC093039-1|AAX88911.1|  425|Homo sapiens unknown protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KCTSSELLCSSAKYLCKWDWC--SHRLCDN 441
           KC S+E  C+S+ ++CK   C  S  LCDN
Sbjct: 166 KCKSAEQSCNSSFFMCKNGRCIPSGGLCDN 195


>AB209707-1|BAD92944.1| 1720|Homo sapiens low density
           lipoprotein-related protein 1B variant protein.
          Length = 1720

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 KCTSSELLCSSAKYLCKWDWC--SHRLCDN 441
           KC S+E  C+S+ ++CK   C  S  LCDN
Sbjct: 4   KCKSAEQSCNSSFFMCKNGRCIPSGGLCDN 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,562,040
Number of Sequences: 237096
Number of extensions: 1563641
Number of successful extensions: 2801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2801
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)