Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H21
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    29   1.7  
Z70270-1|CAB61007.1|  407|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL132904-20|CAE17963.1|  237|Caenorhabditis elegans Hypothetical...    28   3.9  
AF029887-1|AAC48376.1|  407|Caenorhabditis elegans UNC-129 protein.    28   3.9  

>Z81492-6|CAB04034.1|  416|Caenorhabditis elegans Hypothetical
           protein E03H4.10 protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -1

Query: 550 CFQMH*NSP*ITT*NAVSCYNTRICLSMFNYQLINSSCHTICESTNPIYIDILQTNTE 377
           CF+   NSP I T N  +  N + CL +F+ ++ ++S  + C S     + +   N E
Sbjct: 13  CFKACLNSPLICT-NGFTLLNKK-CLKLFDTKVNHTSAESSCNSFGATLVTVKNVNDE 68


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 336 VRRVSSSLNSISGHCISLSASIQKSFLYFGETVQPTNFFASIFSKPYSRIKATTAIL*GV 157
           V ++ + L  ++G   S+S + + S LY   T+      ASI +    R+    A++ GV
Sbjct: 331 VEKLRNELTEVTGGMRSVSLADRSSTLYLNATINEIQRIASILNVNLPRVLEEDALIDGV 390

Query: 156 M 154
           +
Sbjct: 391 L 391


>Z70270-1|CAB61007.1|  407|Caenorhabditis elegans Hypothetical
           protein C53D6.2 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 437 SHNL*EHQSHLHRYFADEHRSSEDVHLISCNGHLLGEF 324
           SH L EH  +L+  F DE  S+ED +L+      +G+F
Sbjct: 50  SHTLTEHMKNLYENFIDED-SNEDGNLVRAIEPAVGKF 86


>AL132904-20|CAE17963.1|  237|Caenorhabditis elegans Hypothetical
           protein Y111B2A.27 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 164 HKIAVVAFIREYGLLKMEAKKLVGCT 241
           HKIA V F  EY +++ E  KL G T
Sbjct: 155 HKIAEVVFAEEYSVVEDEYVKLAGLT 180


>AF029887-1|AAC48376.1|  407|Caenorhabditis elegans UNC-129 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 437 SHNL*EHQSHLHRYFADEHRSSEDVHLISCNGHLLGEF 324
           SH L EH  +L+  F DE  S+ED +L+      +G+F
Sbjct: 50  SHTLTEHMKNLYENFIDED-SNEDGNLVRAIEPAVGKF 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,405
Number of Sequences: 27780
Number of extensions: 274739
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)