Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H18
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.016
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 33 0.022
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 32 0.050
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 31 0.15
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 30 0.20
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.62
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.1
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.3
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 26 4.4
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 26 4.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 4.4
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 4.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 5.8
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 5.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 5.8
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 7.6
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 7.6
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 7.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 7.6
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 25 7.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.6
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.9 bits (74), Expect = 0.016
Identities = 28/143 (19%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Frame = +3
Query: 144 PVENISSEQELI--DQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEV 317
P++ + S+ EL+ D + +D +++ +++ DI LE + L+ + E
Sbjct: 218 PIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDI-----LERDEIVLQFPYTEAAAQEK 272
Query: 318 SNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTVIAVKEDVKDTQTLLRQGFQGVT 497
S EE++ + G + + + E + +R + + E + + L R+ FQ
Sbjct: 273 SQEELELIAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQRAL 332
Query: 498 D--GIQNLSENNENLNGIQISIQ 560
+ G ++ S+ N + +Q I+
Sbjct: 333 EEAGFEDESQLNAQVKNVQAKIR 355
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 33.5 bits (73), Expect = 0.022
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 129 DDIRSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTNIDQETV 308
D + S EN SE+E D +ND+ +L NS+ E + E E++ T + + +Q
Sbjct: 3966 DSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAA 4025
Query: 309 NEVSN 323
N S+
Sbjct: 4026 NNESD 4030
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 32.3 bits (70), Expect = 0.050
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 228 VAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEH 407
+ EDIP E I+ N+ +E NEV +++ Q +V ++ PP+ +E ETQ+
Sbjct: 255 IQEDIPSEKIV-------CYNVIKEKSNEVDHKDSQHVVDEVAQTSPPEVKEVETQSMMI 307
Query: 408 YED 416
++D
Sbjct: 308 FDD 310
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.15
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 2/154 (1%)
Frame = +3
Query: 90 DQIQPETEKELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPV--EIILE 263
DQ + T++E +D++ S E A ++V+ N +P +I +
Sbjct: 367 DQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQQTSEVEANNHQEKPSSLPAVEQINVN 426
Query: 264 EIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTVIAVK 443
E T +T E E +N + L+ + ++ + E+AE I +
Sbjct: 427 EENNTPETE-GLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEE 485
Query: 444 EDVKDTQTLLRQGFQGVTDGIQNLSENNENLNGI 545
VK +LL Q + ++ + N+EN NG+
Sbjct: 486 NAVK---SLLNQEGPATNEEVEKNNANSENANGL 516
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 30.3 bits (65), Expect = 0.20
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = +3
Query: 147 VENISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEE 266
++ + +E++D +++D N+RN +A + P++ +LEE
Sbjct: 126 IKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEE 165
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.7 bits (61), Expect = 0.62
Identities = 27/145 (18%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Frame = +3
Query: 126 SDDIRSPVE-NISSEQELIDQANTINDVQNNL-RNSVAEDIPVEIILEEIQPTLKTNIDQ 299
S+ ++ P + ++++ + + +I++ Q + + VA + + + P+ +
Sbjct: 1301 SEKLQRPQQLSVAATSAVDSKTASISEEQAKIDKQKVALNPSAPEFVPDSTPSDAVASET 1360
Query: 300 ETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQN-PEHYEDAERTVIAVKEDVKDTQTLLR 476
+ N V N+ +++ V ++ +++E + PE A RT ED++ + + LR
Sbjct: 1361 DNKNLVENKAVEKRVEARSSANERKQEERRRKTTPEGNRRALRTRTPTNEDIQRSDSKLR 1420
Query: 477 --QGFQGVTDGIQNLSENNENLNGI 545
Q +ENN+NL +
Sbjct: 1421 EDQSRDRTPQSRSFTNENNDNLRSV 1445
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +3
Query: 237 DIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYED 416
D P +L E + +DQ + E NE++ RLV + G ++ + + +
Sbjct: 1073 DNPTHGLLVETKHPFIKRVDQ--LEEALNEKLARLVGEQMVEGDKEKDKTNEEKNKDEVK 1130
Query: 417 AERTVIAVKEDVKDTQTLL 473
AE T V +D D Q L
Sbjct: 1131 AEMTQPVVNQDSHDLQDQL 1149
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 138 RSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEV 317
R P+E I EL D T NLR VA+++ I +E++ ++ D + E+
Sbjct: 106 RDPLEEIKRAFELFDDDETGKISLRNLRR-VAKELNENIDDQELEAMIE-EFDLDQDGEI 163
Query: 318 SNEEIQRLVVD 350
+ +E +++D
Sbjct: 164 NEQEFIAIMMD 174
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +3
Query: 237 DIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYED 416
D P +L E + +DQ + E NE++ RLV + G ++ + + +
Sbjct: 1073 DNPTHGLLVETKHPFIKRVDQ--LEEALNEKLARLVGEQMVEGDKEKDKTNEEKNKDEVK 1130
Query: 417 AERTVIAVKEDVKDTQTLL 473
AE T V +D D Q L
Sbjct: 1131 AEMTQPVVNQDSHDLQDQL 1149
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.3
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Frame = +3
Query: 81 TIPDQIQPETEKELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPVEII- 257
TIP PE EK S + + S + +D + +D+ + ED V +
Sbjct: 184 TIPKPPSPEVEKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHE-NEDHEVHEVP 242
Query: 258 -LEEIQPTLKT-NIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTV 431
+ ++ T +T N+ E NE +E V LN P + Q + ED +
Sbjct: 243 SIHGMEGTFETVNLTSEAGNE---KEFNNDSVVLNTT-PKEMQISSLDAVDKLEDKPVSN 298
Query: 432 IAVKEDVKDTQTLLRQGFQGVTDGIQN-LSENNENLNG 542
+K +++ + T+ R Q ++ ++ +N+N +G
Sbjct: 299 DNIKANIESSTTVDRASSQLESENNESTFFVHNQNSSG 336
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 156 ISSEQELIDQANTINDVQNNLRNSVAEDIPVEI--ILEEIQPTLKTNIDQETVNEVSNEE 329
IS E+ + + N + + ++ N E+ ++ + EI K+N +NE+ NE+
Sbjct: 485 ISKEEYIENSGNFVVGTEMSIYNLPGENEEDKLFDVTNEIAVENKSNAFYARINELVNEK 544
Query: 330 IQRLVVDLNN 359
L+++ +N
Sbjct: 545 APELILNKSN 554
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 216 LRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVV 347
+R +E +I+ EEI+ TLK+ + E++ E++ +V+
Sbjct: 214 MRTKCSETDFSDILPEEIEATLKSAAEISMGTEITEEDLDNIVM 257
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 66 NARAATIPDQIQPETEKELISDDIRSPVENISSEQELIDQANT 194
N +AT P I + L + + SP E+ SSE+ Q N+
Sbjct: 64 NVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTNS 106
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +3
Query: 120 LISDDIRSPVENISSEQELIDQANTINDVQNNLRN 224
L++DD ++P N+SS E+I+ NT D++ ++R+
Sbjct: 325 LVADDTKTPSPNLSS--EIIE--NTKADIKKSIRS 355
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/48 (18%), Positives = 27/48 (56%)
Frame = +3
Query: 93 QIQPETEKELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAE 236
++QP +++ + D++SP+ ++ + D+ I D+ + + +A+
Sbjct: 480 KLQPSVKEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIAD 527
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 192 TINDVQNNLRNSVAEDIPVEIILEEI 269
TI +Q NL+N + ++P+ + +EEI
Sbjct: 1429 TILLLQKNLKNPILLNLPISVKIEEI 1454
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 5.8
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 219 RNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQN 398
++SVA + VE I + P +KT+ + +++ + + + +N P Q + T
Sbjct: 406 KSSVAHNEKVEDISDSDIPIMKTSSNSTSLDADRDSDTSSISDTSSNSSAPHEQLNATSL 465
Query: 399 PEHYEDAERT-VIAVKEDVKDTQTLLRQGFQGVTD 500
+++ R+ + E K+ +Q F + D
Sbjct: 466 ASTVDESSRSPPLPEVESNKENDIKRKQPFHDLMD 500
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 5.8
Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Frame = +3
Query: 87 PDQIQPET---EKELISDDIR-SPVENISSEQELIDQANTI---NDVQNNLRNSVAEDIP 245
PD ++ E E E + +R + +E + +Q+ + T+ N+ ++ V +I
Sbjct: 940 PDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEIS 999
Query: 246 V--EIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYE-- 413
E I L N E + E + L L + + ++ + YE
Sbjct: 1000 TREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDA--VREKDSALSFKKDYEKI 1057
Query: 414 --DAERTVIAVKEDVKDTQTLLRQ 479
DA+R + ++KED++ ++L+++
Sbjct: 1058 RSDADRVITSLKEDIEKERSLMKE 1081
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 DVQNNLRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSN 323
DVQN L+N ++++++ L T ID E N+ N
Sbjct: 480 DVQNVLKNDSGYWFQLQLLIDVYSRMLFTMIDDEFHNDKQN 520
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +3
Query: 219 RNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPG 365
R++ A D ++ + I P L+ +D+E V + SN++++ + L+ G
Sbjct: 551 RSAFANDALDRLLEKVILPKLEKLMDEELVIDPSNQDLEIFFIILSWKG 599
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 153 NISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTNID 296
++S+ L ++ + DVQ++ + ++ PVE I I PT + +D
Sbjct: 33 DLSTAITLFFESGGVTDVQSSYIEAPSQTEPVEEIRAPIAPTREVLVD 80
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 477 QGFQGVTDGIQNLSENNENLNGIQISI 557
+GF + +GIQ + +N+ENL+ + +I
Sbjct: 7 KGFLDIEEGIQWIKKNSENLSSSKKTI 33
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 75 AATIPDQIQPETEKELISDDIRSPVENISSEQELIDQANTINDVQNN 215
A +IPD + E+EL+S+ + S ++ E+ + +N + QN+
Sbjct: 204 ALSIPDAFRSSLEQELVSETVDSDKDD-PLHDEIDEDSNAESFYQNS 249
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 465 TLLRQGFQGVTDGIQNLSENNENLNGIQI 551
TLL+ G + +QN S+NNE Q+
Sbjct: 587 TLLKSGLPTPANDLQNKSQNNERKASSQV 615
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 7.6
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Frame = +3
Query: 117 ELISDDIRSPVENISSEQELIDQANTIN-DVQNNLRNSVAEDIPVEIILEEIQPTL--KT 287
E + DD+++ ENI+S Q I++ N D+Q+ L +E + +I + +L KT
Sbjct: 1014 ERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKT 1073
Query: 288 N---IDQETVNEVSNEEIQRLV 344
N ++ V ++ +E+ QR V
Sbjct: 1074 NQLKYIEKNVQKLLDEKDQRNV 1095
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,404
Number of Sequences: 5004
Number of extensions: 43914
Number of successful extensions: 195
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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