Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H18
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0020 + 143273-143592,144278-144371,144466-144537,144675-14... 32 0.27
08_02_0577 + 18890801-18891600,18892033-18892911,18903566-189037... 31 0.63
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 30 1.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.5
02_05_0981 - 33278735-33278746,33278882-33279022,33279145-332791... 29 1.9
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 29 1.9
07_03_1013 + 23299569-23300630 29 2.5
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503... 29 2.5
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 29 3.4
09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680... 29 3.4
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059... 29 3.4
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 28 5.9
07_03_1697 - 28795521-28797328,28797430-28797550 28 5.9
09_03_0016 - 11552732-11552835,11553685-11553811,11553918-115541... 27 7.7
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250... 27 7.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 7.7
>05_01_0020 +
143273-143592,144278-144371,144466-144537,144675-144786,
145179-145327,145484-145510,145931-145981
Length = 274
Score = 32.3 bits (70), Expect = 0.27
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Frame = +3
Query: 147 VENISSEQ-ELIDQANTINDVQNNLRNS--VAEDIPVEIILEEIQPTLKTNIDQETVNEV 317
+E+I S Q E++D + N++Q L S V +DI E ++ E+ L+ ++D E+ N V
Sbjct: 158 LEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELD-ALEADMDFES-NSV 215
Query: 318 SN----EEIQRLVVDLN--------NPGPPQRQEHETQNPEHYED 416
+ ++ L +LN P PP RQ++ +P H ED
Sbjct: 216 PSYLQPDKESDLDSELNLPAAPTGHTPAPPNRQQNLVLHPFHNED 260
>08_02_0577 +
18890801-18891600,18892033-18892911,18903566-18903707,
18903726-18904355
Length = 816
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = +3
Query: 306 VNEVSNEEIQRLVVDLNNPGPP------QRQEHETQNPEHYEDAERTVIA-VKEDVKDTQ 464
+ E++NE + + V D P PP Q++EH NP E A+ ++A ++E ++ +
Sbjct: 124 LEELTNERLCQFVYDKPPPPPPLAPAAAQQREHVQLNPVGVEGAKGDILAMLEESPEELR 183
Query: 465 TLLRQGFQG 491
+ GF G
Sbjct: 184 VIAIVGFGG 192
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 327 EIQRLVVDLNNPGPPQRQEHETQN----PEHYE-DAERTVIAVKEDVKDTQTLLRQ---- 479
+++R + L + PP RQEH Q PEH+E DAE + + D D RQ
Sbjct: 84 KLERSIAMLVDRLPPPRQEHARQGRRPPPEHHEYDAEDESVGLHSDGGDHHRRPRQPPRR 143
Query: 480 GFQGVTDGIQNLSENNENLNGIQISI 557
G + + ++ +N N ++S+
Sbjct: 144 GPAFMDRVVDDIHHDNRNRRAARVSL 169
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 1.5
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +3
Query: 111 EKELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTN 290
+KE ++ S V N+SSE E N V+ R + + ++ EI+ TL
Sbjct: 226 DKEATRVELSSDVANLSSENE-----NLKLLVETTEREAGESHKTITLMENEIR-TLSV- 278
Query: 291 IDQETVNEVSNEEIQRLVVDLNN-PGPPQRQEHETQNPEHYEDAERTVIAVKEDVKDTQT 467
++ V E ++++ +VDL N G Q ET + ++ + E K+ QT
Sbjct: 279 --EKQVTEKERDDLKISIVDLENMNGDLSNQLQETNEKCTFLSSQLEKAQLAE--KEVQT 334
Query: 468 LLRQGFQGVTDGIQNLSENNENLNGIQ 548
LL + + + + LS N+NL +
Sbjct: 335 LLSE-IEKIKNENLMLSRENDNLKACE 360
>02_05_0981 -
33278735-33278746,33278882-33279022,33279145-33279199,
33279787-33279950,33280043-33280139,33280507-33280678,
33281107-33281182,33281545-33281661,33281928-33282007,
33282225-33282398,33282636-33282765,33282855-33282941,
33283039-33283302,33284131-33284256
Length = 564
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 76 LPPSPTRYSLKQKKN*LAMI*DHLLKIFPVNKNLLIKQTLSMMFRITYVIVLQKISPL 249
LPP+PT +K N L + HL F +N+ L I +T F + V Q I +
Sbjct: 498 LPPAPTNLLPDKKYNSLVSLSGHLFDKFLINEALDIIETAGGSFHLIRCDVGQSIDDM 555
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/145 (18%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Frame = +3
Query: 117 ELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAED----IPVEIILEEIQPTLK 284
E+I + + I + + ++ T+ D LR+++A+D ++I +EE++ ++
Sbjct: 219 EVIKKLHKDQAQEIKTFRLKLENLQTLKDQAYRLRDNIAQDQEKSDALKIQMEELRTNVQ 278
Query: 285 TNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTVIAVKEDVKDTQ 464
D+ E S +++RL ++N+ R + T + Y +++K+ Q
Sbjct: 279 GVEDKIRRTEKSLADLRRLQQEINS-STSARTTYFTLQQQQYAALSEENEDTDDELKEWQ 337
Query: 465 TLLRQGFQGVTDGIQNLSENNENLN 539
T + + + I L + ++ N
Sbjct: 338 TKFEERMALLQNKISKLERDVDDEN 362
>07_03_1013 + 23299569-23300630
Length = 353
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 258 LEEIQPTLKTNID-QETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPE----HYEDAE 422
L +Q L+ +D QET+N+ +E+ ++L L+ + Q+H + PE HY D E
Sbjct: 71 LRILQAPLQCEVDAQETLNQHRDEQEEKLHHYLDEEHEKKLQDHLDEEPEKKLHHYLDEE 130
Query: 423 R 425
+
Sbjct: 131 Q 131
>02_05_1092 -
34049640-34049934,34050013-34050147,34050229-34050305,
34050541-34050624,34050699-34050849,34050944-34051060,
34051162-34051219,34051412-34051502,34051601-34051648,
34051724-34051792,34051881-34051904,34052125-34052233,
34052338-34052375,34052524-34052672,34052765-34052780
Length = 486
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 225 SVAEDIPVEIILEEIQ-PTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNP 401
S+ +++P + I + ++ P LK QE + V+ E + D+ +P PP++ N
Sbjct: 298 SLQKELPCDAIAQVVEAPELKEI--QEAGSSVAGGEAHKF--DIEDPEPPRKSMRIDANK 353
Query: 402 EHYEDAERTVIAVKED 449
E E + + KED
Sbjct: 354 RKLESFESRLASNKED 369
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 398 VLSFMLLTL--WRSWVVQIYYQPLNFLIRHFINRFLIYICLQRWLDFFENYLNGDIFCNT 225
V SF LLT WRS V + Y+P + ++R IN RW F Y + C+
Sbjct: 265 VTSFELLTAVTWRSRTVALGYKPCH-IVRLMIN----VNARGRWKKFPSGYYGNGLMCSV 319
Query: 224 I 222
I
Sbjct: 320 I 320
>09_06_0205 -
21567467-21567655,21567791-21567876,21567965-21568037,
21568267-21568326,21568887-21568935,21569328-21569431,
21569587-21569640,21569719-21569763,21569817-21569879,
21570415-21570615,21570620-21570797,21570900-21570993,
21571075-21572478,21572560-21572604,21572710-21572788,
21573424-21573589,21573679-21573771,21573872-21573929,
21574063-21574120,21574210-21574367,21575130-21575177,
21575269-21575320,21575404-21575529
Length = 1160
Score = 28.7 bits (61), Expect = 3.4
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = +3
Query: 120 LISDDIRSPVENISSEQEL---IDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTN 290
LI + + +I SE EL I ++ + V N L +V+ + EI + L +
Sbjct: 184 LIHPQVSLRLFDIESEDELLYTIPSSSPLPLVSNILGKNVSSCLH-EIATSDKHFALSGH 242
Query: 291 IDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTVIAVKEDVKDTQTL 470
I + T + N++ Q ++ ++H Q PE T + ++ DVK +Q L
Sbjct: 243 ISRPT-DVFCNKDWQTVMYFFERTITDYWKKHAPQLPEVKAIGNDTCVPLERDVKSSQEL 301
Query: 471 LRQ 479
LR+
Sbjct: 302 LRR 304
>04_04_1291 -
32404716-32404946,32405377-32405478,32405731-32405910,
32406023-32406100,32407501-32407620,32407713-32407805,
32408369-32408443,32408673-32408828,32408957-32409040,
32409773-32410450,32411814-32411877,32411968-32411978
Length = 623
Score = 28.7 bits (61), Expect = 3.4
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +3
Query: 90 DQIQPETEKEL----ISDDIRSPVENISSEQELIDQANTINDVQN-NLRNSVAEDIPVEI 254
D I P T KE I DD+++P E E++++ N ++ VQN N +D+P E
Sbjct: 94 DIIFPSTMKEKNIRKIYDDLKAPSEQKVDEKQVVSDPN-VDIVQNSNNEAHPQKDLPTEG 152
Query: 255 ILEEIQPTLKTNIDQETVNEVSNEE 329
+ PT D++TV+ E+
Sbjct: 153 MGPPEIPT----TDEQTVSSEEKEK 173
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = +3
Query: 102 PETEKELISDDIRSPVENISSEQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTL 281
PE + L D+ R N SS + ++ + R+ +++ LEE +P+L
Sbjct: 1717 PEVDSGLQQDEDRIQSTNASSTLAAGEDVRRFSEQGEHARSVPSKN------LEECEPSL 1770
Query: 282 KTNIDQETVNEVSNEEIQRLVVDLNN 359
+ + +T E + E ++L VDLN+
Sbjct: 1771 ENHSTGKTSIEDISMEHRKLAVDLNH 1796
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Frame = +3
Query: 273 PTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHETQNPEHYEDAERTVIAVKEDV 452
P + + Q+ + S E LV NN P+R + EH + + + ED+
Sbjct: 82 PEAQISSGQQGADMTSRRETDDLVSARNNAPEPERVVPAEKEEEHVQSTSQQAVGNSEDL 141
Query: 453 K--DTQTLL-RQGFQGVTDGIQNLSENNENLN 539
D T Q ++G SE+ E+ N
Sbjct: 142 TRGDAATAADAQCSDRASEGKVQFSESREDSN 173
>09_03_0016 -
11552732-11552835,11553685-11553811,11553918-11554144,
11554247-11554401,11554538-11554615,11555452-11555523,
11555631-11555789,11556873-11556979
Length = 342
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 92 VGDGGSACV*HEYREQQVRVRSHVRS 15
+G+GG CV H Y E V +RS
Sbjct: 228 IGEGGFGCVYHGYLEDNTEVAVKIRS 253
>07_01_0346 -
2501825-2501908,2502143-2502244,2502623-2502646,
2502693-2502819,2503122-2505109,2505804-2505821
Length = 780
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 210 NNLRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLVVDLNNPGPPQRQEHE 389
++ RNS+ + P E++ ++ET ++NEE QRL L+ Q +EH
Sbjct: 501 DDYRNSLQD--PALTYQEKVTSLEAALSEKETALRLANEENQRLKEKLSK----QEKEHG 554
Query: 390 TQNPEHYED 416
QN + Y +
Sbjct: 555 IQNNQDYPE 563
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 165 EQELIDQANTINDVQNNLRNSVAEDIPVEIILEEIQPTLKTNIDQETVNEVSNEEIQRLV 344
E+ L + + +ND+QNNL + + E L + E ++ S EE+ +LV
Sbjct: 1023 EENLAHKNDELNDLQNNLEEEGHKRMHAEAALSMV----------ENLHSKSQEEVGKLV 1072
Query: 345 VDLN 356
+DL+
Sbjct: 1073 MDLD 1076
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,244
Number of Sequences: 37544
Number of extensions: 262704
Number of successful extensions: 826
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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