Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H18
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.91 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 70  HALPPSPTRYSL 105
           H LPPS TRY L
Sbjct: 446 HGLPPSATRYDL 457


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 372 QRQEHETQNPEHYEDAERTVIAVKEDVKDTQTLLRQ-GFQGVTDGIQNLSENNENLNGIQ 548
           Q+Q H+  + EH  + ER        +KD Q    + G + +   IQ L E  + LN IQ
Sbjct: 103 QQQHHQDSSSEHASNQER--FGYFSSLKDHQHQFAELGRKKLEQAIQQLQEQLQ-LNVIQ 159


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = -2

Query: 449 IFLDRNHSTLCIFIVLRVLSFMLLTLWRSWVVQIYYQPLNFLIRHFINRFLIY 291
           +F DR       F   R  +     LW  W+  ++   + ++  H +N+ L Y
Sbjct: 466 LFADRGMKVYYYFFTQRTST----NLWGEWMGVLHGDEVEYVFGHPLNKSLKY 514


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 148  LKIFPVNKNLLIKQTLSMMFRITYVIVL 231
            +KIF  N NL++    +++  I  VIV+
Sbjct: 1578 MKIFMANLNLVVPVVAAILVIIVAVIVI 1605


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 63  LNARAATIPDQIQPETEKELISDDIRSPVENISSEQELIDQANTINDVQNNL 218
           +N  A  I    +P+ E +   DD  S  ENI S++E  + +++ ++  N++
Sbjct: 68  VNFVAGGIQQAGKPKEETD-DKDDDESDNENIKSQKEFPNSSSSDDERPNSI 118


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 297 DLYLSSTLVGFLRELS 250
           +LYL + L+GF+  L+
Sbjct: 870 ELYLQNNLIGFIGNLT 885


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,625
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)