Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H17
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    26   3.4  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    25   4.5  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 342 YILNLFNGSSNVYINCLLNIMTISINLNTKITN*LLFISFLHYLHTRKFINY 187
           Y+ N+F+   N YI+    I  +S+    ++ + L++   L+ L     I+Y
Sbjct: 67  YVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISY 118


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 421 GTLSSGVFKHSLTNITTS 368
           GTLSS  F H +T++ TS
Sbjct: 172 GTLSSDYFSHPITSVKTS 189


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -1

Query: 388 LTNITTSYKHIVRQTLHFKFV*RFFKRIYKLFIEHNDN 275
           L  ++ +   IVR   HF+F  +F  +++KL++E++++
Sbjct: 636 LIYVSQTINEIVRVN-HFEFQEKFVGQLWKLYMENSNS 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,225
Number of Sequences: 5004
Number of extensions: 31102
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)