Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H17
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    29   2.6  
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    28   4.5  
11_04_0293 + 15926561-15928834                                         27   6.0  

>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 327 TNLKCNVCRTMCLYEVVMLVSECLNTPDDRVP*SYKNRCLLYIE 458
           TNL C   ++   Y  V   SECL+    ++   Y+ +C L  E
Sbjct: 407 TNLTCEDAKSKSAYACVSTNSECLDVTHGKLYIGYRCKCSLGFE 450


>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 351 DKHYILNLFNGSSNVYINCLLNIMTISINLNTKITN*LLFIS 226
           D+  I ++FN    ++I+ L+N   +  ++  K+TN LL  S
Sbjct: 156 DQMMICHMFNTLKEIHISFLINPAFLDESMEVKVTNPLLSFS 197


>11_04_0293 + 15926561-15928834
          Length = 757

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 327 FNGSSNVYIN-CLLNIMTISINLNTKITN*LLFISFLHYLHTRKF 196
           F GS  ++++ C++  MT+S + N +I   +LF+  L YL    F
Sbjct: 139 FTGSGGMFMSYCMIFAMTLSPSPNWRIMLGVLFVPSLLYLFVTVF 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,277,898
Number of Sequences: 37544
Number of extensions: 142232
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)