Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H17
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp...    27   9.3  
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical...    27   9.3  
AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative inte...    27   9.3  
AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arr...    27   9.3  

>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
            transporting ATPase protein.
          Length = 1121

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 403  VFKHSLTNITTSYKHIVRQTLHFKFV 326
            VF+H LTNI + +  I+   L F FV
Sbjct: 1042 VFRHGLTNIVSVFAVIIEILLLFMFV 1067


>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
            protein Y105E8A.12a protein.
          Length = 1121

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 403  VFKHSLTNITTSYKHIVRQTLHFKFV 326
            VF+H LTNI + +  I+   L F FV
Sbjct: 1042 VFRHGLTNIVSVFAVIIEILLLFMFV 1067


>AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative
           integrin-linked kinase protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 NVCRTMCLYEVVMLVSECLNTPDDRVP 422
           +VC+ MC   ++ +  E   +P+DRVP
Sbjct: 138 DVCQPMCKNTILEIAQEHGQSPNDRVP 164


>AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arrest
           at two-fold protein4 protein.
          Length = 466

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 NVCRTMCLYEVVMLVSECLNTPDDRVP 422
           +VC+ MC   ++ +  E   +P+DRVP
Sbjct: 155 DVCQPMCKNTILEIAQEHGQSPNDRVP 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,236,040
Number of Sequences: 27780
Number of extensions: 167349
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)