Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H14
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 29 0.58
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 28 0.77
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.3
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 27 1.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.3
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 3.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 5.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 9.5
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.58
Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Frame = +2
Query: 8 VRVHRCLFHSFQRDILAYACMLF*CIKINKLTVVIKLF*LSIIMDVPAKGNVLGHFV--- 178
+ + C + S + Y+ ++ N+ +++ L + I+ K +LG F
Sbjct: 89 IAILACSWASAIQSSTTYSYQVYATASFNRTSMISTLEIATAIISSVCKP-ILGKFSDIT 147
Query: 179 --PARYILAVLGSIGMAIVYGLKVNLSVAMVGMLNHTAIKLNLGHGDVENVTTTIAGDVE 352
P Y L +L + IV +S ++G ++ +++G ++ + T + GD+
Sbjct: 148 SRPMTYTLVLLFYVIGFIVVASSSTISAYVIG-----SVFISIGSSGLDYLNTLVVGDLT 202
Query: 353 CEPTGGSNSSAKELTGPFI---WSSE--VQGIVLSCYFWGY 460
G ++ L+ P+I W + VQGI+ S + WGY
Sbjct: 203 SLKWRGFMTAL--LSTPYIATVWFTGFIVQGIIDSNWRWGY 241
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 TGGSNSSAKELTGPFIWSSEVQGIVL-SCYFWGYFVSQIPGARVAEL 499
TGG + AKE+ PF+ + ++ SC F F+ + P + +E+
Sbjct: 255 TGGGEALAKEMGLPFLGKIPLDPLIARSCDFGKSFIDECPESPASEI 301
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 157 KCFRTFRPSAIHPRCSRLYWYGHSLWAKG*SVRSYGRNVK 276
KC R R C W GHS W + + GRN K
Sbjct: 497 KCRRCRRTKYCSKECQHQAWPGHSRWCR--VIHKDGRNSK 534
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 139 GCAGKRKCFRTFRPSAIHPRCSRLYWYGHSLWAKG*SVRSYGRNVKP 279
G A KCF + S++ H L+A S YGR +KP
Sbjct: 235 GNAYPEKCFSNYGGSSLRSNFCHEQAVRHLLYAIAASAAKYGRAIKP 281
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 160 CFRTFRPSAIHPRCSRLYWYGHSLWAKG*SVRSYGRNVKPYSYQ 291
C RT+ ++ C + W H+ + ++SY + P SYQ
Sbjct: 2117 CIRTYVVIPLNEECGFIEWVNHTRPFREILLKSYRQKNIPISYQ 2160
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 399 ARLFGPRKCKESYSAATFGVISFLKYQVLEWQN 497
A + P +C E++ FGV FL+ ++L N
Sbjct: 407 ASMVVPEECPETFETQQFGVEHFLRVELLRAVN 439
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = -2
Query: 351 STSPAIVVVTFSTSPCPRFSLIAVWFNIPTIATDRLTFSP*TMAIPIEPRTARMYRAGTK 172
+T+PA+V S+ P + + + P + L P ++ IEP + +
Sbjct: 312 TTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARP-EGSVAIEPSRVLLQWSSQS 370
Query: 171 CPKTFPFAGTSIMIDN*NSF 112
T P AG SI + SF
Sbjct: 371 SSHTIPSAGASIPTSSLKSF 390
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 269 MLNHTAIKLNLGHGDVENVTTTIAGD--VECEPTGGSNSSAKELTGPFIWSSE 421
+ NHT L LG + N+ TTI V+ E T G S +EL W+ +
Sbjct: 975 LANHTNELLGLGDESLCNLETTIEDTSLVKLETT-GDTPSKRELPATPSWTRD 1026
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,572
Number of Sequences: 5004
Number of extensions: 47545
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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