Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H14
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 44 8e-05
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 40 0.001
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 40 0.002
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 40 0.002
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 38 0.004
11_01_0557 + 4394754-4396040 33 0.15
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 30 1.4
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 30 1.4
10_01_0168 - 1883380-1883594,1884572-1888325 28 4.1
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 7.2
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 27 9.6
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 410 WSSEVQGIVLSCYFWGYFVSQIPGARVAELYTAKWVMYFSV 532
W+S G+V S +FWGY +SQ+PG +A+L+ + V+ V
Sbjct: 165 WNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGV 205
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 392 LTGPFIWSSEVQGIVLSCYFWGYFVSQIPGARVAELYTAKWVMYFSVSI 538
L+ + W+ G+V S + WGY VS I G + + Y K VM + V++
Sbjct: 125 LSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVAL 173
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 392 LTGPFIWSSEVQGIVLSCYFWGYFVSQIPGARVAELYTAKWVMYFSV 532
++ F WS G++ S +FWGY ++QI G A+ + K V+ F V
Sbjct: 209 MSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGV 255
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 392 LTGPFIWSSEVQGIVLSCYFWGYFVSQIPGARVAELYTAKWVMYFSV 532
++ F W+ + G++ S +FWGY ++QI G A+ K V+ F V
Sbjct: 147 MSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGV 193
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 410 WSSEVQGIVLSCYFWGYFVSQIPGARVAELYTAKWVM 520
WSS GIV S + WGY S + G +A+ Y K VM
Sbjct: 156 WSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVM 192
>11_01_0557 + 4394754-4396040
Length = 428
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 425 QGIVLSCYFWGYFVSQIPGARVAELYTAKWVMYFS 529
+G++LS +++GY +SQIPG A+ + V+ S
Sbjct: 45 KGMILSMFYYGYVLSQIPGGWAAQRLGGRLVLLLS 79
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 287 IKLNLGHGDVENVTTTIAGDVECEPTGGSNSSAKELT 397
IKL LG DV N AGDV+ + GGS+ + +T
Sbjct: 820 IKLELGWEDVVNDEDGEAGDVDSDNIGGSDVGVQTVT 856
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 378 LFEPPVGSHSTSPAIVVVTFSTSPCPRFSLIAVWF 274
L EP GS S I VV FSTS C + IA+++
Sbjct: 633 LLEPLWGSKELSKFIFVVNFSTSLCVFITAIALYY 667
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 420 KCKESYSAA-TFGVISFLKYQVLEWQNYILRNGLC 521
+C+ S AA FG + K +LEW+N I ++ +C
Sbjct: 360 RCQGSPLAAKAFGSMLSTKTSILEWKNIIAKSDIC 394
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 149 AKGNVLGHFVPARYILAVLGSIGMAIVYGLKVNLS 253
AK N++ + + Y + +LG++ AIVY L +LS
Sbjct: 1533 AKANMILEHLVSIYAVGILGALSGAIVYTLYTHLS 1567
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 472 LRNEITPKVAAEYDSLHFRGPNKRASQLLSATVRTSR 362
L + I+ + YD + + R+SQLLS +VR SR
Sbjct: 336 LADNISVSSTSSYDRIDKECGSNRSSQLLSVSVRRSR 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,290
Number of Sequences: 37544
Number of extensions: 304929
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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