Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H14
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.21 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.49 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 423 TSEDQINGPVSSLALLFE--PPVGSHSTSPAIVVVTFSTSPCP 301
           ++E   +G V+SL       PP G H++S  ++  T +   CP
Sbjct: 495 STESTCSGEVASLTEYHHVAPPSGHHASSAPLLAATLAGGLCP 537


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 256 SYGRNVKPYSYQTEPW 303
           S+ R V PYS+QT+ W
Sbjct: 143 SFLRTVPPYSHQTDVW 158


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 300 RFSLIAVWFNIPTIATDRLTFSP*TMAIPI 211
           ++ ++  WFN   I T+ L ++  T  IPI
Sbjct: 417 QYQVVGKWFNSLDIRTEELIWARGTKDIPI 446


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 300 RFSLIAVWFNIPTIATDRLTFSP*TMAIPI 211
           ++ ++  WFN   I T+ L ++  T  IPI
Sbjct: 507 QYQVVGKWFNSLDIRTEELIWARGTKDIPI 536


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 206 GSIGMAIVYGLKVNLSVAMVG--MLNHTAIKLNLGHGDV 316
           G +   + + L++  +++ +     NH  +K+ + HG V
Sbjct: 865 GHLSTLVEFALELKKALSSINEQSFNHFVLKMGINHGPV 903


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,753
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)