Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H13
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    31   0.26 
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    29   1.8  
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940...    28   3.2  
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    26   9.9  
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688...    26   9.9  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    26   9.9  

>01_07_0111 -
           41137822-41138973,41139453-41139540,41139850-41139969,
           41140165-41140211,41140796-41141029,41141305-41141505,
           41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  YIHFEHIFE*CIDYLLRTVIKKITKHSNTSDVH 127
           YI   H  + CIDYLL     +I+K S+ S VH
Sbjct: 463 YIQARHTGQSCIDYLLGMSFLQISKSSSVSPVH 495


>09_06_0076 +
           20710482-20710670,20711313-20711547,20711664-20711689,
           20712000-20712293,20712603-20712728,20712827-20712896,
           20712992-20713182,20713394-20713519,20713878-20714279,
           20714364-20714758,20714861-20715315,20715403-20715524,
           20715653-20715693,20716026-20716129,20716363-20716576,
           20717667-20717780,20718576-20718612
          Length = 1046

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -3

Query: 291 SIIPTMTFIIFS*KNS*NTTQIFFSVIINN*MECELYVFRE-NIFR*HKITKKLY*CTSL 115
           +++   T++I+S  N      +  S+++ N + C L ++   +I+R +K  KK Y   SL
Sbjct: 200 NLVGNTTWMIYSAVNK----GVELSMLMTNSVACGLNIYHLLSIYRHNKERKKWYSTLSL 255

Query: 114 VFECFVIFFI 85
               F++F++
Sbjct: 256 EIHVFILFYV 265


>10_06_0004 -
           9407954-9408007,9408219-9408386,9408441-9408542,
           9408710-9408934,9409889-9410047,9411768-9411900,
           9412827-9413758,9413842-9413987,9415863-9416082
          Length = 712

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = -3

Query: 195 ECELYVFRENIFR*HKITKKLY*CTSLVF 109
           EC LYV R  IFR  K T  +Y  T LVF
Sbjct: 643 ECLLYVDRHRIFRILKFTTDMY-LTCLVF 670


>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 387 ILFGCHCSIWY*L*T*KYGNK-QYKERQMYLFFSIIP 280
           ILF  HC IWY      YG + ++ ER  Y+  +I P
Sbjct: 836 ILFSRHCPIWY-----GYGGRLKFLERFAYINTTIYP 867


>03_06_0389 -
           33567385-33567969,33568052-33568402,33568646-33568848,
           33569044-33569299,33569459-33569671,33569757-33569882,
           33569965-33570102,33570191-33570536,33570630-33570896,
           33571192-33571378,33571457-33571556,33571659-33571909,
           33572242-33572428,33572562-33572573
          Length = 1073

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 387 ILFGCHCSIWY*L*T*KYGNK-QYKERQMYLFFSIIP 280
           ILF  HC IWY      YG + ++ ER  Y+  +I P
Sbjct: 822 ILFSRHCPIWY-----GYGGRLKFLERFAYINTTIYP 853


>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 97  NKTLEYK*RTSVQFFSNFMLPKNIFPENIEFTFHSV 204
           +K++  K   +V   ++F+LP N +P+ + F + S+
Sbjct: 117 SKSISKKLSDAVAELASFLLPSNAWPDLLTFLYKSI 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,119
Number of Sequences: 37544
Number of extensions: 137851
Number of successful extensions: 246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)