Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H13
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    29   1.7  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   5.1  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   5.1  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   5.1  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    27   5.1  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    26   9.0  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    26   9.0  

>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -3

Query: 390 IILFGCHCSIWY*L*T*KYGNKQYKERQMYLFFSIIPTMT--FIIFS 256
           +I   C+ ++W+ +   K G+++  +R+MYL F ++  +   FI+F+
Sbjct: 189 LICVVCYIALWFIIRKHKNGSQKSFQREMYLAFQVLVLLCAFFIMFA 235


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 313  TSNVFVL-FNHTHNDIYNF*LEK*LKHDAD 227
            T NV V  FNH   +I +F L K LKHDAD
Sbjct: 1013 TRNVLVKKFNHV--EITDFGLSKILKHDAD 1040


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 313  TSNVFVL-FNHTHNDIYNF*LEK*LKHDAD 227
            T NV V  FNH   +I +F L K LKHDAD
Sbjct: 1013 TRNVLVKKFNHV--EITDFGLSKILKHDAD 1040


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 313  TSNVFVL-FNHTHNDIYNF*LEK*LKHDAD 227
            T NV V  FNH   +I +F L K LKHDAD
Sbjct: 1064 TRNVLVKKFNHV--EITDFGLSKILKHDAD 1091


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 227 ICVVF*LFF*LKIINVIVGMIEKNKYI*RSLYCLLPYF 340
           I V F +     I NVI+G +     + RS Y L PYF
Sbjct: 67  IIVSFWIIIGFAIANVIIGFVGVIGAVIRSKYLLAPYF 104


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 226 NLRRVLTIFLTKNYKCHCGYD 288
           NL+R+LTIF+ +N  C   YD
Sbjct: 600 NLKRILTIFVGENLLCTDIYD 620


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 194 SIQLLIITEKKICVVF*LFF*LKI--INVIVGMIEKNKYI*RSLYCLLPYFYV 346
           SI  +I+T   +  V+ L    K+  +N   G+I KN+ I   L CLL  FYV
Sbjct: 9   SITFMIMTGGVMANVYALIIAGKMSSMNSSFGIITKNQEICNLLMCLLFLFYV 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,834,923
Number of Sequences: 27780
Number of extensions: 170473
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)