Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H12
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.6  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   6.1  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.0  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 450 KYGKNYK*YFDKQF*QVRYLYNNEVNLDNKLEKHKLKVRINRRHDYEIYLLAY*QS*AKI 271
           +Y  N K Y  K   +   L N E+    K EKH  +V    +H + + L A  Q+  ++
Sbjct: 682 EYKVNKKFYAIKVLKKEAILKNEELE-SLKTEKHVFEVANKEKHPFLLNLFASFQTSTRV 740

Query: 270 Y 268
           Y
Sbjct: 741 Y 741


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 372 DLPRYYINNGPV-KIACQNIICNFYRISITVN 464
           DL R   +N  + ++ C NI+ N Y IS  +N
Sbjct: 294 DLKRLSKSNASIAEVKCNNIVTNLYPISSGLN 325


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   RGFLYKYIGILNILLSKAV*PSIKTNVL 87
           RGFLY  IG+L  + +  +  S+ TN+L
Sbjct: 338 RGFLYTTIGLLTKVDNHLITNSLLTNLL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,220
Number of Sequences: 5004
Number of extensions: 25082
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)