Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H11
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    32   0.056
SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    25   4.8  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    25   6.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   8.4  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 31.9 bits (69), Expect = 0.056
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -2

Query: 179 FQLFTGLTFEDLRDVSSDSVVHSITSECRSTESPQLVQLVAHNC 48
           F++F+  +FE L  V++++ +  + +E R TE P+  + V  NC
Sbjct: 380 FEIFSHCSFESLTTVTTNTNIWWVWAESRCTEIPESKRTVFPNC 423


>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2

Query: 176 GSTSDSDRAKDQREARRSRHRVLGEPSQPAES 271
           G+  D DRA++ ++++ S+ +  G+P++  E+
Sbjct: 4   GNQRDVDRARNLKKSQASKKKQAGDPTKRLEA 35


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 149 DLRDVSSDSVVHSITSECRSTESPQLVQLVAHNCFHIFPI 30
           DL D S + ++ S+ +    TE  +  ++V  NC H++PI
Sbjct: 74  DLVDDSDEVLLKSLHNVLLETEITE-GKMVCGNCGHVYPI 112


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 183 LQTQIEQKISGRRDGVDIGYWESLLSQLK-AHMG-RARL 293
           L TQ +++   RRD    G  ESL++++  A MG RAR+
Sbjct: 38  LVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARI 76


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
 Frame = +3

Query: 168 EQLEALQTQIEQ------KISGRRDGVDIGYWES 251
           + LEALQTQ+E+      K+  +RD  DIG  +S
Sbjct: 569 DHLEALQTQLERVPKAFPKLFFKRDAKDIGSIDS 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,102
Number of Sequences: 5004
Number of extensions: 22709
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)