Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H11
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 53 1e-07
04_04_0768 - 27954149-27954911,27954955-27955328 34 0.074
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 3.7
01_03_0001 + 11500567-11500696,11503312-11503397,11503515-115040... 28 3.7
09_04_0582 - 18694158-18694256,18694522-18694560,18695564-186957... 28 4.8
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650... 28 4.8
12_02_0735 - 22636835-22639502,22639755-22640734 27 8.5
10_08_0861 - 21139173-21139613 27 8.5
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58... 27 8.5
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 52.8 bits (121), Expect = 1e-07
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Frame = +3
Query: 6 REKNANQAYWEDVETIVCD-ELNKLRRLGA------------PALTRD--GVHHAVAADV 140
RE N YWE + +VCD EL + R+ A P + + G+H ++ DV
Sbjct: 280 RESQINVKYWEAL-MVVCDWELGEARKRDALDRARVRGEEPPPDVLAEERGLHASIEGDV 338
Query: 141 TQIFKGKTGEQLEALQTQIEQKISGRRDGVDIGYWESLLSQLKAHMGRARLRD 299
+ +GKT +LE +Q+QIE ++ V + YWE++L +L + +A LR+
Sbjct: 339 KDLLEGKTSTELEEMQSQIESQMRSGTAKV-VEYWEAILKRLHIYKAKACLRE 390
>04_04_0768 - 27954149-27954911,27954955-27955328
Length = 378
Score = 33.9 bits (74), Expect = 0.074
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 18 ANQAYWEDVETIVCDELNKLRRLGAPALTRD-GVHHAVAADVTQIFKGKTGEQLEALQTQ 194
AN+ +W + + E+ + A D +H AV ADV + +GK+ ++L+A+Q
Sbjct: 153 ANEPFWAAAKAMCNAEIEQAATGTGTAGHGDRALHSAVFADVKSVVEGKSLDELDAMQHA 212
Query: 195 IEQKISGRRDGVDIGYWESLLSQLKAHMGRARL 293
I +++ V + +W+ + ++ + L
Sbjct: 213 IAARMATGEAKV-VEHWQEVTELIRVEKAKKYL 244
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 26 GVLGRCGNNCVRRVEQAAETRCSC 97
GV G CG N +V + ET CSC
Sbjct: 295 GVKGVCGPNSFCQVTASGETSCSC 318
>01_03_0001 +
11500567-11500696,11503312-11503397,11503515-11504097,
11504242-11504474
Length = 343
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 348 QGVHVHPPNEHGSGPAETDPGTSQMLNEHVNEAQNEG 458
+G+ HPP+ H D GT+Q + + +N EG
Sbjct: 245 KGMQNHPPDHHIQAFGVLDMGTAQYMGQQLNMYTAEG 281
>09_04_0582 -
18694158-18694256,18694522-18694560,18695564-18695707,
18695783-18695914,18696882-18697103,18697496-18697963
Length = 367
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 27 AYWEDVETIVCDELNKLRRLGAPALTR 107
A W D + C + +LRRLGA A R
Sbjct: 69 AAWRDAYALACLHVARLRRLGAAAADR 95
>01_03_0214 +
13863123-13863593,13863671-13864132,13864308-13865038,
13865121-13865291,13865371-13865629,13866069-13866158
Length = 727
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 90 HRVSAACSTRRTQLFPHLPNTPGSHS 13
H++ AC +++LF N PG+H+
Sbjct: 21 HKMGKACKNWKSKLFTEFVNPPGNHT 46
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -3
Query: 436 TCSFNICDVPGSVSAGPDPCSLGGCTC 356
+C CD+P ++ G PC G C
Sbjct: 157 SCKMRGCDMPAFLNGGRPPCDCGFMIC 183
>10_08_0861 - 21139173-21139613
Length = 146
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 184 SASNCSPVLPLKICVTSAATAWCTPSRVSAGAPSL 80
+AS +PVL L + + + A C P GAP++
Sbjct: 2 AASKVAPVLALSLLLLAVAAHGCEPHCSGGGAPAV 36
>04_01_0056 -
579934-579993,580064-580243,580349-580507,581004-581050,
583772-583895,584093-584956
Length = 477
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 100 SAGAPSLRSLFNSSHTIVSTSSQYAW 23
SAGAP+ + FN++ T+V+ +S A+
Sbjct: 86 SAGAPAREASFNTTFTVVAAASPVAF 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,496
Number of Sequences: 37544
Number of extensions: 180734
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -