Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H11
         (501 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC005175-4|AAC24305.1|  813|Homo sapiens R31449_3 protein.            101   1e-21
AC005542-1|AAC32903.1|  266|Homo sapiens R31449_3 protein.             32   1.3  
Y16791-1|CAA76387.1|  425|Homo sapiens type I hair keratin 5 pro...    30   5.2  
X90762-1|CAA62285.1|  122|Homo sapiens HHa5 hair keratin type I ...    30   5.2  
BC121045-1|AAI21046.1|  739|Homo sapiens ADAM metallopeptidase d...    30   5.2  
AY358321-1|AAQ88687.1|  715|Homo sapiens ADAM18 protein.               30   5.2  
AJ133004-1|CAB40812.1|  739|Homo sapiens tMDC III protein protein.     30   5.2  
BC110387-1|AAI10388.1|  563|Homo sapiens hypothetical protein LO...    29   9.1  

>AC005175-4|AAC24305.1|  813|Homo sapiens R31449_3 protein.
          Length = 813

 Score =  101 bits (243), Expect = 1e-21
 Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
 Frame = +3

Query: 9   EKNANQAYWEDVETIVCDELNKLRRLGA----PALTRDGVHHAVAADVTQIFKGKTGEQL 176
           E+  N  +W D+ TI  DE++KLR+L A    P   R+GV+ +V++DV  +FKGKT  QL
Sbjct: 233 EQGKNADFWRDMTTITEDEISKLRKLEASGKGPGERREGVNASVSSDVQSVFKGKTYNQL 292

Query: 177 EALQTQIEQKISGRRDGVDIGYWESLLSQLKAHMGRARLRDXXXXXXXXXXXXXXXEQGV 356
           + +   IE KI      +D+GYWESLL QL+AHM RARLR+               EQGV
Sbjct: 293 QVIFQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLYKLKQEQGV 352

Query: 357 HVHP 368
              P
Sbjct: 353 ESEP 356


>AC005542-1|AAC32903.1|  266|Homo sapiens R31449_3 protein.
          Length = 266

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 9   EKNANQAYWEDVETIVCDELNKLRRLGA 92
           E+  N  +W D+ TI  DE++KLR+L A
Sbjct: 233 EQGKNADFWRDMTTITEDEISKLRKLEA 260


>Y16791-1|CAA76387.1|  425|Homo sapiens type I hair keratin 5
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 232 STPSRLPLIFCSI*V*SASNCSPVLPLKICVTSAATAWCTPSRVSAGAPSLR 77
           S  S+LP   C+     + +C P LP   C  SAA   C+P  +    P  R
Sbjct: 373 SEDSKLPCNPCAPDYSPSKSCLPCLPAASCGPSAARTNCSPRPICVPCPGGR 424


>X90762-1|CAA62285.1|  122|Homo sapiens HHa5 hair keratin type I
           intermediate filament protein.
          Length = 122

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 232 STPSRLPLIFCSI*V*SASNCSPVLPLKICVTSAATAWCTPSRVSAGAPSLR 77
           S  S+LP   C+     + +C P LP   C  SAA   C+P  +    P  R
Sbjct: 70  SEDSKLPCNPCAPDYSPSKSCLPCLPAASCGPSAARTNCSPRPICVPCPGGR 121


>BC121045-1|AAI21046.1|  739|Homo sapiens ADAM metallopeptidase
           domain 18 protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 433 CSFNICDVPGSVSAGPDPCSLGGC 362
           C +N C + GSV  G  PC    C
Sbjct: 418 CDYNTCKLKGSVKCGSGPCCTSKC 441


>AY358321-1|AAQ88687.1|  715|Homo sapiens ADAM18 protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 433 CSFNICDVPGSVSAGPDPCSLGGC 362
           C +N C + GSV  G  PC    C
Sbjct: 394 CDYNTCKLKGSVKCGSGPCCTSKC 417


>AJ133004-1|CAB40812.1|  739|Homo sapiens tMDC III protein protein.
          Length = 739

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 433 CSFNICDVPGSVSAGPDPCSLGGC 362
           C +N C + GSV  G  PC    C
Sbjct: 418 CDYNTCKLKGSVKCGSGPCCTSKC 441


>BC110387-1|AAI10388.1|  563|Homo sapiens hypothetical protein
           LOC25900 protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = +3

Query: 6   REKNANQAYWEDVETIVCDELNKLRRLGAPALTRDGVHHAVAADVTQ------IFKGKTG 167
           RE++  +  WE+  T+     +++  L   A   D     +A  V Q      +FKG   
Sbjct: 250 RERDEYKRRWEEEYTVRIQLQDRVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMS 309

Query: 168 EQLEALQTQIEQK 206
             L  L T+I++K
Sbjct: 310 NNLSELDTKIQEK 322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,442,044
Number of Sequences: 237096
Number of extensions: 922492
Number of successful extensions: 6888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6887
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)