Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H11
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 60 9e-10
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 60 9e-10
Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical pr... 29 2.5
U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF045640-3|AAM81120.1| 344|Caenorhabditis elegans Hypothetical ... 27 5.8
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 27 5.8
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 27 5.8
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 27 7.6
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 27 7.6
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 60.1 bits (139), Expect = 9e-10
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Frame = +3
Query: 21 NQAYWEDVETIVCDELNKLRRLGAPALTRDGVHHAVAADVTQIFKGKTGEQLEALQTQIE 200
N+ +W DV I DE+ K A R VH +V +V +FK K+ ++L L+ Q++
Sbjct: 260 NETWWMDVTRIAEDEIQK-----KAAQNRGDVHASVQTEVQNMFKNKSIDELLKLEDQMD 314
Query: 201 QKISGRRDGVDIGYWESLLSQLKAHMGRARLRDXXXXXXXXXXXXXXXEQGVHVHPPNEH 380
KI G GYW+ L QLK + R RLR+ EQ +
Sbjct: 315 AKIRGNSGNK--GYWQDLDDQLKVFIARKRLREHHGRVLRLQLAIIKEEQKKEIQQQESE 372
Query: 381 GSGP-AETDPGTSQMLNEHVNEAQNE 455
P AE P E E ++E
Sbjct: 373 ELLPVAEVPPQVKIQKEEEEEEEEDE 398
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 60.1 bits (139), Expect = 9e-10
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Frame = +3
Query: 21 NQAYWEDVETIVCDELNKLRRLGAPALTRDGVHHAVAADVTQIFKGKTGEQLEALQTQIE 200
N+ +W DV I DE+ K A R VH +V +V +FK K+ ++L L+ Q++
Sbjct: 260 NETWWMDVTRIAEDEIQK-----KAAQNRGDVHASVQTEVQNMFKNKSIDELLKLEDQMD 314
Query: 201 QKISGRRDGVDIGYWESLLSQLKAHMGRARLRDXXXXXXXXXXXXXXXEQGVHVHPPNEH 380
KI G GYW+ L QLK + R RLR+ EQ +
Sbjct: 315 AKIRGNSGNK--GYWQDLDDQLKVFIARKRLREHHGRVLRLQLAIIKEEQKKEIQQQESE 372
Query: 381 GSGP-AETDPGTSQMLNEHVNEAQNE 455
P AE P E E ++E
Sbjct: 373 ELLPVAEVPPQVKIQKEEEEEEEEDE 398
>Z48055-1|CAA88134.1| 544|Caenorhabditis elegans Hypothetical
protein T07A5.3 protein.
Length = 544
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 120 HAVAADVTQIFKGKTGEQLEALQTQIEQK 206
+AVA V Q F KT E E LQT EQK
Sbjct: 11 NAVADTVRQTFSRKTWEHKEQLQTITEQK 39
>U50311-8|AAA92312.1| 145|Caenorhabditis elegans Hypothetical
protein C25E10.7 protein.
Length = 145
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 17 CEPGVLGRCGNNCVRRVEQAAET-RC 91
C+ G + N+CVRR+E AET RC
Sbjct: 53 CKDGYVRNTKNDCVRRLECTAETSRC 78
>AF045640-3|AAM81120.1| 344|Caenorhabditis elegans Hypothetical
protein C11D2.4 protein.
Length = 344
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 57 CDELNKLRRLGAPALTRDGVHHAVAADVTQIFKGKTGEQLEALQTQIE 200
C +NK G P L+ + + + ++ +IFK +G + L +++
Sbjct: 103 CAAVNKAIAAGIPVLSAEWMKNVGREEIDRIFKSDSGHSIPLLDDRVK 150
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 135 DVTQIFKGKTGEQLEALQTQIEQKISGRRDGV 230
DV ++ + + EQLE +Q +E+++ G+R+ +
Sbjct: 2 DVDRLMRDLSVEQLENIQQNLEKEMEGKRESL 33
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 135 DVTQIFKGKTGEQLEALQTQIEQKISGRRDGV 230
DV ++ + + EQLE +Q +E+++ G+R+ +
Sbjct: 2 DVDRLMRDLSVEQLENIQQNLEKEMEGKRESL 33
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 17 CEPGVLGRCGNNCVRRVEQAAETRCSC 97
C+PGV G N C + +Q+ T C
Sbjct: 431 CKPGVTGTTCNRCAKGYQQSRSTVTPC 457
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 17 CEPGVLGRCGNNCVRRVEQAAETRCSC 97
C+PGV G N C + +Q+ T C
Sbjct: 431 CKPGVTGTTCNRCAKGYQQSRSTVTPC 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,575
Number of Sequences: 27780
Number of extensions: 148111
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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