Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H10
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.13 
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    27   2.1  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.5  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   8.5  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 412 RGTWDRRVMARPDQS*PTYRTGPTQLPRIQTGYLSLESV 296
           +GTWDR+ +  P    P+    P+ +PR Q G  S+E++
Sbjct: 507 KGTWDRQSLPPPQ---PSISRRPSVIPRPQEGSKSMEAI 542


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 203 WFASKDFTMVDMALANTLKLTIVL 132
           W  S + T VD++LAN + L  VL
Sbjct: 217 WLRSTNITKVDLSLANVISLVDVL 240


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 355 YTLAMTDPDAPSRADPKFREWHHWLVANVP 444
           Y++   D D P+    +F    +WL+ N+P
Sbjct: 235 YSVITLDLDVPNYETNRFETHCNWLLTNIP 264


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 106 ISIYGPWRTLFGQSQGKTINIYKYV 32
           I IY PW+  F + + +++ I+ +V
Sbjct: 322 IGIYTPWKKWFNEYKYRSVKIFFFV 346


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 439 VPGNNVAAGETLSEYVGSG 495
           VP NN+A G   ++Y G G
Sbjct: 48  VPVNNIAGGYPYAQYTGQG 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,612
Number of Sequences: 5004
Number of extensions: 42419
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)