Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H10
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...   132   1e-31
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...   132   1e-31
AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical ...    56   1e-08
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    34   0.051
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of el...    27   5.8  
AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of el...    27   5.8  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score =  132 bits (319), Expect = 1e-31
 Identities = 54/82 (65%), Positives = 64/82 (78%)
 Frame = +1

Query: 256 YPSGVEVNEGNELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFREWHHWLVA 435
           + SGVE N GN LTPTQVKD P V W+A     YTL  TDPDAPSR +P +REWHHWLV 
Sbjct: 29  FNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYREWHHWLVV 88

Query: 436 NVPGNNVAAGETLSEYVGSGPP 501
           N+PGN++A G+TLSEY+G+GPP
Sbjct: 89  NIPGNDIAKGDTLSEYIGAGPP 110


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score =  132 bits (319), Expect = 1e-31
 Identities = 54/82 (65%), Positives = 64/82 (78%)
 Frame = +1

Query: 256 YPSGVEVNEGNELTPTQVKDIPSVSWEAASDQFYTLAMTDPDAPSRADPKFREWHHWLVA 435
           + SGVE N GN LTPTQVKD P V W+A     YTL  TDPDAPSR +P +REWHHWLV 
Sbjct: 65  FNSGVEANLGNVLTPTQVKDTPEVKWDAEPGALYTLIKTDPDAPSRKEPTYREWHHWLVV 124

Query: 436 NVPGNNVAAGETLSEYVGSGPP 501
           N+PGN++A G+TLSEY+G+GPP
Sbjct: 125 NIPGNDIAKGDTLSEYIGAGPP 146


>AL034365-5|CAA22258.1|  172|Caenorhabditis elegans Hypothetical
           protein Y69E1A.5 protein.
          Length = 172

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 265 GVEVNEGNELTPTQVKDIPSVSWEAAS-DQFYTLAMTDPDAPSRADPKFREWHHWLVANV 441
           G++V  G  +    +K+ P  +   A  +  YT+ M DPD  SR +P   EW HWLV N+
Sbjct: 32  GIQVEPGMTMQVRNLKNAPRWALPGADPESIYTVLMIDPDNLSRKNPSVAEWLHWLVCNI 91

Query: 442 PGNNVAAG 465
           P +N+  G
Sbjct: 92  PASNIIDG 99


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 256 YPSGVEVNEGNELTPTQVKDIPSVSWEAASDQ--FYTLAMTDPDAPSRADPKFREWHHWL 429
           + + + V+ GN +T       P ++ E+  +   F TL M + D  +    K  E   W+
Sbjct: 161 FENDIVVHSGNVITANSTLKRPEITIESVGNGGGFNTLLMINLDGNALDLGKNGEIVQWM 220

Query: 430 VANVP-GNNVAAGETLSEYV 486
           ++N+P G  ++AG  + +Y+
Sbjct: 221 ISNIPDGEAISAGSEIIDYL 240


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 342 RSFPGYRRDIFHLSRCQLITFVYFNPRRVFHSS 244
           +S P ++R +   SR ++I  V  NPRR+FH S
Sbjct: 26  KSLPAFKRIVERCSRQRVIQ-VSDNPRRLFHCS 57


>AF038611-5|AAT27250.1|  760|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform b
           protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 219 DIRHHLVCLEGFHDGRHGSRKHP 151
           +I+H L C+  F D  +GS K+P
Sbjct: 110 NIKHFLECIRPFQDSDYGSCKYP 132


>AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform a
           protein.
          Length = 833

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 219 DIRHHLVCLEGFHDGRHGSRKHP 151
           +I+H L C+  F D  +GS K+P
Sbjct: 183 NIKHFLECIRPFQDSDYGSCKYP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,729
Number of Sequences: 27780
Number of extensions: 252820
Number of successful extensions: 687
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)