Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H10
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 180 DGRHGSRKHPKIDHSAVCY*QNNRKSQYTAHGVHYSDN 67
           D  H +  H +  HS+    QNN +    AH    S+N
Sbjct: 421 DNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 108 KSQYTAHGVHYSDNHKV 58
           KSQY A+ VHY     +
Sbjct: 283 KSQYQANNVHYQGKENI 299


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 42  TNMWTDNRLQW 10
           T MWTD+ L W
Sbjct: 96  TLMWTDSHLSW 106


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
          acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 42 TNMWTDNRLQW 10
          T +WTD+ L+W
Sbjct: 59 TQIWTDHHLKW 69


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 45  FTNMWTDNRLQWP 7
           F   W DNRL+ P
Sbjct: 88  FAQTWKDNRLRLP 100


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 36  MWTDNRLQW 10
           +WTD +LQW
Sbjct: 82  IWTDYQLQW 90


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 51  LTFTNMWTDNRLQW 10
           LTF   W D RL++
Sbjct: 84  LTFREQWLDERLRF 97


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 51  LTFTNMWTDNRLQW 10
           LTF   W D RL++
Sbjct: 84  LTFREQWLDERLRF 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,621
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)