Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H09
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 28 0.36
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 0.47
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 1.9
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 25 1.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 5.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 24 5.8
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 24 5.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 7.7
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 23 7.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 23 7.7
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 23 7.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 7.7
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 27.9 bits (59), Expect = 0.36
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 1 RTRKLHNIELYTYYKLIN*KQGPKYDSPKSRQDIREY 111
R R++ ++ + + KQG KYDSP S ++I+ +
Sbjct: 696 RNRRIEGSKVKKILRSLTLKQGMKYDSPISVKEIKPF 732
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.5 bits (58), Expect = 0.47
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 240 SIAPTCLSDCSSIT*STIKTRGGYSLLMYDGIGGERLTSQYLL 112
S++ TCL DCS +T + G + L + I G+ LT + +L
Sbjct: 987 SLSLTCLLDCSKMTTFIVSQLKGVAGLQQNEIHGKLLTIRAVL 1029
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 124 RRKPLSPYPIIHKQRITTPSL 186
+R P SP P++ K+R +PSL
Sbjct: 317 KRSPSSPVPLLAKKREGSPSL 337
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 189 IKTRGGYSLLMYDGIG 142
+KT G Y L+ YDGIG
Sbjct: 157 MKTLGKYGLVRYDGIG 172
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 23.8 bits (49), Expect = 5.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 241 SRRQTSEGWSVKFECAALGNW 303
S+ +T + WS+K C+ G W
Sbjct: 2139 SKCKTVKQWSLKERCSCSGEW 2159
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 65 DQNMTVQNRAKIYGSISKYC-DVSRSPPIPSY 157
D+ MT+ ++Y +I YC D S++ + ++
Sbjct: 39 DEGMTITKYMELYTAIHNYCADASKTITVDNF 70
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 121 LRRKPLSPYPIIHKQRITTPSLNC*LCNAGTI 216
L + +PYPI K + T P C N G I
Sbjct: 23 LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI 54
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.4 bits (48), Expect = 7.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 71 NMTVQNRAKIYGSISKYCDVSRSPP 145
++ + +AKIY +++CD + S P
Sbjct: 2155 HLNAKEKAKIYCMFAQFCDNNYSSP 2179
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 71 NMTVQNRAK-IYGSISKYCDVSRSPPIPS 154
NMT +R I+ ++S D +RSP +PS
Sbjct: 152 NMTSTSRMSGIHDALSLQSDFTRSPDMPS 180
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 119 IYLYSRISWRDFGLSYFGPCF*FINL*YVYNSIL 18
+ L+S+ W + SYF C ++YNS++
Sbjct: 1202 VLLFSK--WHKYLTSYFESCLLSTEYMHIYNSVI 1233
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.4 bits (48), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 306 PPVT*RSTFELHRPTLGSLSSTSIAPTCLS 217
PP S LH+P+L S SST +C S
Sbjct: 535 PPPKSISPSILHKPSLESASSTPKISSCSS 564
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.4 bits (48), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 213 CSSIT*STIKTRGGYSLL--MYDGIGGERLTSQYLLILPYILA 91
C + ++ + Y LL ++ GIGG R S Y ++P + A
Sbjct: 704 CMKLAPNSANSLNYYYLLRALFRGIGGGRFESLYKEVMPLLHA 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,216
Number of Sequences: 5004
Number of extensions: 26881
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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