Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H09
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 28 1.3
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324... 27 3.8
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 27 3.8
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 26 5.1
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131... 26 6.7
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140... 26 6.7
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 26 6.7
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 127 VAIFTYTPVYLGAILDCHILVLVFSLLTCSM 35
+ IFT P+ +G IL+ +L +FS +T +
Sbjct: 1545 IGIFTAVPMIMGFILELGLLKAIFSFITMQL 1575
>10_08_0440 +
17930970-17931297,17931682-17931905,17932439-17932465,
17933747-17934340
Length = 390
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +2
Query: 86 NRAKIYGSISKYCDVSRSPPIPSYISKE*PPLVL--------IVDYVMLEQSLKHVGAME 241
NR I+ C + I ++SK+ P L+L +VD V E +LK G++E
Sbjct: 166 NRNIIFNRTRDDCQLLTQEIIDCHVSKKVPYLLLTGPTRAVVVVDPVDFEVALKVKGSIE 225
Query: 242 VEDK 253
EDK
Sbjct: 226 SEDK 229
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 293 NAAHSNFTDQPSEVC 249
NA HSNFT+ P + C
Sbjct: 626 NALHSNFTENPDQEC 640
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 273 HRPTLGSLSSTSIAPTCLSDCSSIT 199
H P +GS +STSI+ C+ SS T
Sbjct: 1393 HLPDVGSSTSTSISDNCIQTESSNT 1417
>12_01_0177 -
1312229-1312498,1314758-1315630,1315729-1315885,
1316207-1316247
Length = 446
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 279 ELHRPTLGSLS-STSIAPTCLSDCSSIT*STIK 184
ELH P L + S+A L++CS+I STI+
Sbjct: 292 ELHAPNLTTFEYDGSLALVTLNECSNIKASTIR 324
>11_01_0176 -
1403284-1403553,1404313-1404468,1404569-1404787,
1405198-1405440,1405539-1405695,1406186-1406226
Length = 361
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 279 ELHRPTLGSLS-STSIAPTCLSDCSSIT*STIK 184
ELH P L + S+A L++CS+I STI+
Sbjct: 155 ELHAPNLTTFEYDGSLALVTLNECSNIKASTIR 187
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 56 KNKDQNMTVQNRAKIYGSISKYCDVSRSP 142
K K++ + ++ +YG++ C+VS SP
Sbjct: 570 KMKEKIQAIHSKTPMYGNVMTKCNVSGSP 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,494,650
Number of Sequences: 37544
Number of extensions: 160613
Number of successful extensions: 350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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