Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H09
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL132863-11|CAB60578.2|  143|Caenorhabditis elegans Hypothetical...    27   3.4  
AF125964-8|AAD14756.1|  214|Caenorhabditis elegans Hypothetical ...    27   3.4  
AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    27   3.4  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    25   7.9  

>AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.6 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 139 RAAYVAIFTYTP-VYLGAILDCHILVLVFSLLTCSMYIIL 23
           RA YV    Y P + LGA      L +VF++L C + +IL
Sbjct: 179 RAGYVPTCQYPPQLALGAFQKMTHLKIVFTILNCVVILIL 218


>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 105 PYILARFWTVIFWSLFLVY 49
           PY  +R+WT I WSL LVY
Sbjct: 178 PY--SRYWTSIQWSLNLVY 194


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 105 PYILARFWTVIFWSLFLVY 49
           PY  +R+WT I WSL LVY
Sbjct: 178 PY--SRYWTSIQWSLNLVY 194


>Z67990-7|CAA91938.1|  406|Caenorhabditis elegans Hypothetical
           protein F02D10.7 protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 174 GYSLLMYDGIGGERLTSQYLLILPYILARFWTVIFWSLFLVY 49
           G++ +++DG+G  ++     L  PY  +R   +IF S+  +Y
Sbjct: 152 GFASILFDGVGSRQILPINSLFRPY--SRVTNIIFHSIKSMY 191


>AL132863-11|CAB60578.2|  143|Caenorhabditis elegans Hypothetical
           protein Y37H2A.11 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 172 TTPSLNC*LCNAGTIT*TRGRYGSRRQTSEGWSVKFECAAL 294
           TT + NC  C AG +T T G  G         +    CA L
Sbjct: 65  TTTTTNCVSCTAGLLTFTTGNIGDTTPIQSPGTDANNCAIL 105


>AF125964-8|AAD14756.1|  214|Caenorhabditis elegans Hypothetical
           protein W03G1.8 protein.
          Length = 214

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 95  KIYGSISKYCDVSRSPPIPSYISKE*PPLVLIVDYVMLEQSL-KHVGAMEVEDKLPRVG 268
           +I G +    DV +S  +   I KE   L+++++ +M+ + L   VG M  ED++ R+G
Sbjct: 128 RIVGLVKLLKDVFKSENVIVEIDKE--KLLMMINSMMVARELVNEVGHMITEDEVGRLG 184


>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 130 YVAIFTYTPVYLGAIL--DCHILVLVFSLLTCSMYIILYYVI 11
           Y+ IFTY       +   D H ++   S  TC  Y   +Y+I
Sbjct: 222 YITIFTYYVCIAVGVTGEDLHFVINNMSFFTCLAYTQTFYII 263


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 195 STIKTRGGYSLLMYDGIGG 139
           S I   GGY LL  DG+GG
Sbjct: 434 SDIVEHGGYVLLFPDGVGG 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,417,381
Number of Sequences: 27780
Number of extensions: 145302
Number of successful extensions: 406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)