Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H08
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   157   4e-39
06_02_0037 - 10856616-10856915,10857527-10860238                       28   3.8  
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402...    27   6.6  
11_01_0564 - 4447078-4448519,4449465-4449711                           27   8.7  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   8.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  157 bits (381), Expect = 4e-39
 Identities = 70/110 (63%), Positives = 89/110 (80%)
 Frame = +3

Query: 18  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVYT 197
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ EA V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 198 SFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQ 347
            + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 223 AYSLGSWNEVYTEASFMSLTAAASTIFLITNFLMALSL 110
           AY+ GSW ++    S   L AA   + ++T  +   SL
Sbjct: 525 AYAAGSWRDIGASLSIFVLVAAIIVLLVVTYIVSCKSL 562


>06_01_0570 +
           4026889-4027537,4028340-4028689,4029258-4029433,
           4029593-4029659,4029746-4029780,4030084-4030186,
           4031606-4031699,4031764-4031813,4031889-4032000,
           4032275-4032401,4032491-4032941
          Length = 737

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 375 NKLPTSSVHSVDAPYPLGSCSWVVYGSACPS*ICYAPLCYGSRMTRSSG 229
           NKLP  +   V A + L S +   YGS  PS +  A L +    T S G
Sbjct: 567 NKLPLRTCRGVIAEFQLPSDTIETYGSQSPSILSDAWLAFQGPRTVSIG 615


>11_01_0564 - 4447078-4448519,4449465-4449711
          Length = 562

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 208 FPSCMQNSTTACHARSIAKWCVTDLRRTGGSVHHPR 315
           F  CM+          + KW V D+   GGS   P+
Sbjct: 334 FSKCMEAMENCLRDAKVDKWSVDDVVLVGGSTRIPK 369


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 21  TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 170
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,652,772
Number of Sequences: 37544
Number of extensions: 208633
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)