Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H08
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 18  MTRKRRNGGRAKHGRGHVKAVRCTNC 95
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 18  MTRKRRNGGRAKHGRGHVKAVRCTNC 95
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 18  MTRKRRNGGRAKHGRGHVKAVRCTNC 95
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 161 GSFNNIPDHKLFDGF 117
           G  + I  HK FDGF
Sbjct: 615 GGISEIQKHKWFDGF 629


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 386 SYYLINSLLPLYILWTRHIPWEVALGWCTDPPVL 285
           +YYL +  +   IL    +P E++L W   P VL
Sbjct: 76  NYYLFSLAISDLILLVLGLPNELSLFWQQYPWVL 109


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 296 DPYTTQEQLPKGYGASTECTEEVG 367
           +P+T QE L +G    T C    G
Sbjct: 614 EPFTFQEGLSEGMRTRTVCGVAAG 637


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 365 LLPLYILWTRHIPW 324
           +L + ++WT  IPW
Sbjct: 163 ILFIVLIWTYTIPW 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,281
Number of Sequences: 438
Number of extensions: 2086
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)