Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H07
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    36   0.005
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    27   3.0  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   3.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.2  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   5.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.2  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.2  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   5.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   6.8  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   6.8  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.0  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 188 PEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRKYGLAGADLEED 325
           P     +P G+ P++  DG  Y +S AI  +L RKYG +    EED
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 392 EKDEAVKAKKLAEFRETKYQFLIEKLNEILQK 487
           EKD+     KLAE  +   +F+I + N+IL K
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRRTNDILSK 516


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 269 ISRYLGRKYGLAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLA 427
           + + +G    + G DL E +EI++ V+F+     N+ A+ +  +    + K+A
Sbjct: 19  LEKEIGETVKIEG-DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVA 70


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 134 LAYGGQEFEDKRISMDQWPEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRK 292
           L Y   E++ +  S   + +I    P G +P L +DG  Y   + I+ Y+ R+
Sbjct: 672 LVYPYDEYQLEASS--HFSQISNTEPMGCLPELGLDGYGYKLFVPINEYIPRR 722


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -1

Query: 550 EHTGEDEIAPSQLSKSDVAAVLLEYFI-QFLNEELVFGLAEFCQFLGFHRLVFLVMDGGG 374
           EH     I   +++K     V  E  I + +  + V  L +F +   F+ LV  + +GG 
Sbjct: 89  EHVAVKVIRKYEMNKKQRQGVFKEVNIMRRVKHKNVVNLFDFVETEDFYHLVMELAEGGE 148

Query: 373 VCTNIVKELHVLINLEVFL*VCTSEAV 293
           +   IV   +   NL   + +  +EAV
Sbjct: 149 LFHQIVNFTYFSENLARHIIIQVAEAV 175


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 30/139 (21%), Positives = 62/139 (44%)
 Frame = +3

Query: 141 TAGRNSKTNAYQWTNGLKSSPRPRSVKCRCWKLTVNSTLRASPSAGTSVASTASLVQT*R 320
           T   +S ++    +    +SP   S        + +S+  +S S+ +S +S++S   +  
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194

Query: 321 KTSRLIRTWSSLTIFVQTPPPSITRKTRR*KPRNWQNSARPNTSSSLRN*MKYSRRTAAT 500
            +S    + SS ++ + T   S +  +      +  +S+RP++SSS    M  S   +  
Sbjct: 195 SSSSSSSSSSSSSVPI-TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTV 253

Query: 501 SLLES*LGAISSSPVCSIT 557
           ++  S   + +SS V S T
Sbjct: 254 TVTPSSSSSSTSSEVPSST 272


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 EIKPKTPFGQMPLLEIDGK 247
           E+K ++P GQ P LE DG+
Sbjct: 11  ELKDESPIGQSPHLENDGR 29


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -1

Query: 448 VFGLAEFCQFLGFH--RLVFLVMDGGGVCTNIVKEL-HVLINLEVFL*VCTSEAVLATEV 278
           + G  E C+F  F+  R            T +V  +  VL   EVF      EA+  +E 
Sbjct: 172 LLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVNTMVKVLRGTEVFTEQQKEEALKRSEN 231

Query: 277 PADGDALSV 251
           PAD D L+V
Sbjct: 232 PADNDFLAV 240


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +2

Query: 299 LAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLAEFRETKYQFLIEKLNEI 478
           LA  D E   E+D N  ++         V+Y   E  +  +L   R    Q    +L   
Sbjct: 93  LANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQ----QLPVG 148

Query: 479 LQKNGGHIALGKLTW 523
           L+K   +I  GK+ W
Sbjct: 149 LRKQYPNIIRGKIWW 163


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 AGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEA 406
           + +D EE+ E+D N + L  I A     H E   A
Sbjct: 30  SSSDSEEESELDTNKQALEHINAQKNITHNENKSA 64


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 225 RCWKLTVNSTLRASPSAGTSVASTASLVQT*RKTSRLIRTWSSLTIFVQTPPPSITRKTR 404
           RC +  +  TLR   ++G S  +  S+     ++S +I    S T  + + P S+    R
Sbjct: 391 RCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHS-TSLLSSQPCSLCGFNR 449

Query: 405 R*KPRNWQNSARPNTSS 455
               R ++  +RP+++S
Sbjct: 450 TQPLRQFEFRSRPDSTS 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,608
Number of Sequences: 5004
Number of extensions: 50163
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)