Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H06
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0049 + 31282563-31282841,31283052-31283903,31284109-312841... 29 1.7
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 29 2.2
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 28 2.9
03_01_0242 - 1873066-1873232,1874127-1874186,1874286-1874359,187... 28 2.9
09_06_0184 - 21413275-21414267 28 3.8
11_01_0614 + 4911167-4911830,4911944-4911984 27 5.1
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 27 6.7
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 27 6.7
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 27 6.7
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692... 27 6.7
04_03_0151 + 11905926-11906618 27 6.7
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 27 8.8
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 27 8.8
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792 27 8.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 27 8.8
07_01_0529 - 3922868-3923143,3924019-3924141 27 8.8
>03_06_0049 +
31282563-31282841,31283052-31283903,31284109-31284194,
31284544-31284678,31285087-31285252
Length = 505
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 127 RGRPVYDLVRDEELAHRGYIRVVGVQGT 210
RGRPV RD+ELA + V+GV T
Sbjct: 28 RGRPVSTAARDDELAGKSAYEVLGVGET 55
>05_03_0261 +
11214086-11214148,11215019-11215462,11216504-11216666,
11218145-11218441,11218842-11218858
Length = 327
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 276 SAASCRSIWRNAVASAP--VAPGPRSLHSHNSNIASVGELFVANQVIYRSTPSLDASARQ 103
SA SC IWR AV P + + ++ + +G+ + YR PS + +A++
Sbjct: 26 SATSCNRIWRCAVQRCPNTTTAIMKEMRAYLKKNSRIGKYLNLHPSSYRPMPSSETAAKR 85
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 76 GSSERSRQRLARACIEARGRPVY--DLVRDEELAHRG 180
GS+ RS Q+ A AC ARGR Y L+ D + H G
Sbjct: 245 GSNVRSNQQAA-ACTSARGRSTYGHQLLLDGAVYHNG 280
>03_01_0242 -
1873066-1873232,1874127-1874186,1874286-1874359,
1875098-1875264,1875487-1875581,1875873-1875897,
1875988-1876083,1876204-1876263,1876388-1876585,
1877354-1877626
Length = 404
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 43 RSYKTTVMFYTGSSERSRQRLARACIEARGRPVYDLVRDE 162
RS ++ GSS S AR ++A G P+++ V+ E
Sbjct: 48 RSETMFPIYVMGSSRASSAAAARGIVDAAGDPIWEAVKSE 87
>09_06_0184 - 21413275-21414267
Length = 330
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 206 PCTPTTL-I*PLWASSSSRTKSYTGRPRA---SMQARASRCRERSEDPV 72
PCT + + + PLW+S S R + G P + ++QA AS SE V
Sbjct: 28 PCTASEVHLPPLWSSPSDRWSPHIGTPGSHIGAVQAPASSLSSCSETAV 76
>11_01_0614 + 4911167-4911830,4911944-4911984
Length = 234
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 8 ASVPGESPFKLSGRIKRQLCSILDPPNARGNDWRALASRLG 130
AS GE + + I +LD PNARG+ A+R G
Sbjct: 67 ASGDGEGSLRCARTIYSHAARLLDRPNARGDTTLHCAARAG 107
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 282 SRSAASCRSIWRNAVASAPVAPGPRSLHSHNSNIAS 175
+R+ S RS+ R S P APGP + ++ IA+
Sbjct: 19 TRTLTSTRSVGRTPTLSTPHAPGPYTSSTNAEAIAT 54
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 83 PNARGNDWRALASRLGVDRYMTWFATKSSPTEAILELWE 199
P AR + W+ + RLG M+W + P ELWE
Sbjct: 858 PFARDDSWKHICLRLGKAGSMSWDVRINDP--HFRELWE 894
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 294 GRPWSRSAASCRSIWRNAVASAPVAP 217
GRP+ AASC +A A+AP AP
Sbjct: 24 GRPFPPIAASCPFSSSSAAAAAPAAP 49
>06_03_0933 +
26067109-26067232,26067334-26067486,26068929-26069279,
26069375-26069451,26069665-26070982,26071948-26072009,
26072253-26072309
Length = 713
Score = 27.1 bits (57), Expect = 6.7
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Frame = -1
Query: 333 FA*LKGASIHNHDGRPWSRSAASCRSIWRNAVASAPVAPGPRSLHSHNSNIASVGELF-- 160
FA + + + D S + C+S+W + S G S + N+ +++ F
Sbjct: 360 FANISNGLVLDTDDSGSSYAGMFCKSMWETSNGSPSCHSGNSSANKSNNGVSAPANQFQV 419
Query: 159 --------VANQVIYRSTPSLDASARQSLPRAFGGSSIEHNCRFIRPLNLNG 28
+ANQ +S A A Q ++ GG S+ N +F P+ NG
Sbjct: 420 QSKFGFSALANQFPVQSNCGFSAPANQYQVQSNGGFSVPAN-QF--PVQSNG 468
>04_03_0151 + 11905926-11906618
Length = 230
Score = 27.1 bits (57), Expect = 6.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 324 LKGASIHNHDGRPWSRSAASCRS 256
+ A +HN PW +++ SCR+
Sbjct: 41 VSAAKVHNQKPAPWDQASRSCRN 63
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 132 TPSLDASARQSLPRAFGGSSIEHNCRFIRPLNLNGLSPGTLASC 1
T + + ++ S+P AF S ++H+ ++ N+NGL + +C
Sbjct: 271 TLNYNINSNSSMPHAFE-SRLDHHDGYVNNYNVNGLRRKRMMAC 313
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 74 LDPPNARGNDWRALASRLGVDRYMTWFAT 160
LD P GN WR+ S + ++R TW+ T
Sbjct: 584 LDKP---GNKWRSHNSTIPINRPFTWYKT 609
>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
Length = 264
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 273 AASCRSIWRNAVASAPVAPGPRSLHSHNSNIASVG 169
AA+ + WR A+ AP+ L H +AS G
Sbjct: 32 AAAAEAFWRAAMPGAPMPDAIVELLHHEHGVASAG 66
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 98 NDWRALASRLGVDRYMTWFATKSSPTEAILELWECRE 208
+DW SR GV WF T S + L+ CRE
Sbjct: 111 HDWLLYLSRSGVQALYLWFPTPSFRLHSC--LFSCRE 145
>07_01_0529 - 3922868-3923143,3924019-3924141
Length = 132
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 135 STPSLDASARQSLPRAFGGSSIEHNCRFIR 46
+TP+ ++R+ GGSSI HN RF +
Sbjct: 12 TTPAAAEASRREQQAGRGGSSIGHNRRFAK 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,831
Number of Sequences: 37544
Number of extensions: 235899
Number of successful extensions: 813
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -