Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H06
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 386 HLPTADTHKRMSDVDKIDLH 327
           HLPT+ T  +M  ++  DLH
Sbjct: 382 HLPTSLTKSKMEVMELSDLH 401


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 2  HEASVPGESPFKLSGRI 52
          HEAS P E  FK   ++
Sbjct: 37 HEASAPAEGKFKTVSKV 53


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 315 ASIHNHDGRPWSRS 274
           A+I  HDG  W++S
Sbjct: 20  AAIAGHDGNLWAKS 33


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 255 WTDTTPPIC 281
           WT TTP IC
Sbjct: 495 WTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 255 WTDTTPPIC 281
           WT TTP IC
Sbjct: 548 WTITTPAIC 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,350
Number of Sequences: 438
Number of extensions: 2180
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)