Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H03
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    28   0.80 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.2  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   7.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.8  

>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 195 GPCFRCVPPLPRP-LAECPLAG 133
           GPC+RC+ P P P +A C  +G
Sbjct: 181 GPCYRCMFPNPTPVVASCAKSG 202


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 174  PPLPRPLAECPLAG*PQTTCPLAGWPQTTLVPNSCS 67
            PP+P P A+ P    P T  P+     T  VP S S
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSS 1057


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 324 WWLMYLGSILHVSVQLLIQ 268
           +W+ YL  I+HV   LL+Q
Sbjct: 50  YWMSYLSIIMHVGQSLLLQ 68


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 198 FGPCFRCVPPLPRPLAECPLA 136
           FGP  RC  P+PR     P A
Sbjct: 30  FGPLIRCDIPIPRTRTSRPFA 50


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 274 KELDAYMKNAPEI 312
           K++DAY+K APEI
Sbjct: 774 KKMDAYVKGAPEI 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,656
Number of Sequences: 5004
Number of extensions: 40922
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)