Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H03
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    31   0.81 
09_02_0082 - 4060018-4061604                                           30   1.4  
04_04_0478 - 25522862-25523000,25523138-25523310,25523450-25523755     29   1.9  
01_06_0608 + 30575897-30576142,30576252-30576755                       29   3.3  
06_01_1203 + 10393555-10393939,10396144-10396352                       28   5.7  
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044...    28   5.7  
02_04_0046 + 19211961-19212231,19212651-19212706,19212947-192130...    28   5.7  

>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 137 QADPRPHVPWQVGPRPPLCRIPAARGITKTXPP 39
           +A P P  P   GP PP    PA  G +KT PP
Sbjct: 596 KAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPP 628


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -1

Query: 186 FRCVPPLPRPLAECPLAG*PQTTCPLAGWPQTTLVPNSCSPGDH 55
           F   PP+P PL   P    P    P  GW       N C    H
Sbjct: 52  FLPAPPVPAPLVHAPPTLAPPLVVPRGGWTIPPTTSNDCFGDGH 95


>04_04_0478 - 25522862-25523000,25523138-25523310,25523450-25523755
          Length = 205

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 175 YTTETGSEDDAHQGGAGR-SXLEQYMAGTKAALDKELDAYMKNAP 306
           +T   G + D   GGAGR S +E+  A   AALD +    M   P
Sbjct: 43  FTAGGGGDGDGGNGGAGRMSAVEEEHAEKVAALDAQYKRMMDEQP 87


>01_06_0608 + 30575897-30576142,30576252-30576755
          Length = 249

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 43  GXVLVIPRAAGIRHKGGLGPTCQGTCGLGSACQGT 147
           G   ++PR    + KGG  P C+  C  G   +GT
Sbjct: 102 GQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGT 136


>06_01_1203 + 10393555-10393939,10396144-10396352
          Length = 197

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 158 LLLNVPWQADPRPHVPWQVGPRP 90
           L L   W+ADP P   W+V P P
Sbjct: 69  LSLASSWEADPSPASLWEVDPSP 91


>04_04_1584 +
           34601927-34602144,34603324-34603510,34604239-34604496,
           34604866-34604965,34608523-34608639,34608704-34608804,
           34609035-34610141
          Length = 695

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 60  PPGCRNSAQGWSGANLPGDMWSGVSL 137
           P GCR+S  G   ++ P   W G SL
Sbjct: 272 PAGCRHSVGGAGCSSFPSPAWRGCSL 297


>02_04_0046 +
           19211961-19212231,19212651-19212706,19212947-19213011,
           19213138-19213212,19213305-19213383,19213591-19213629,
           19213712-19213820,19214334-19214452,19215282-19215401,
           19215846-19216232
          Length = 439

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 192 PCFRCVPPLPRPLAEC 145
           PC+RC+ P P P+A C
Sbjct: 205 PCYRCLFPNPPPVAAC 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,415,070
Number of Sequences: 37544
Number of extensions: 329912
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)