Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H03
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 1.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 29 1.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 29 1.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical pr... 29 1.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 29 1.7
AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical ... 29 2.2
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 29 2.9
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 142 PGRLTPDHMSPGRLAPDHPCAEFLQPGGSPKXXPPF 35
PG + PD P L P HP F + G P PPF
Sbjct: 371 PGYIKPDTFQPIILGPPHPTV-FHKDGSPPHHVPPF 405
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 3935 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 3985
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 4464 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 4514
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 4145 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 4195
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 3935 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 3985
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 4464 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 4514
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 4145 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 4195
>Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical
protein ZK1307.9 protein.
Length = 369
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 151 SKRTW*RRYTTETGSEDDAHQGGAGRSXLEQYMAGTKAALDKELDAYMKNA 303
S+R + R T+T S GGA S E+ A KA DK ++A A
Sbjct: 254 SRRIFRRPEETDTPSTSSGSSGGAVPSASERLKATMKAERDKRINASFSTA 304
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 158 LLLNVPWQADPRPHVPWQVGPRPPLCRIPAARGITKTXPPFLKKXXGGXSK 6
L++ +P+ A P+P + W PL + TK P ++ G K
Sbjct: 3354 LVITIPFTASPQPDISWTKEGGKPLAGVETTDSQTKLVIPSTRRSDSGPVK 3404
>AF078785-4|AAC27089.3| 609|Caenorhabditis elegans Hypothetical
protein C04E12.4 protein.
Length = 609
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 461 KKNHHDTESRLTLINIKTTQKLLSRFKLR*ISIFNI 354
KK+ ++ S N+K+T+K+L + ++R +SI NI
Sbjct: 130 KKDKNEEGSIYWKFNLKSTEKILEKLEIRMVSINNI 165
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 143 PWQADPRPHVPWQVGPRPPLCRIPAA 66
P DP P VP + P PP+ +PAA
Sbjct: 148 PGAPDPVPAVPVEPSPAPPVPAVPAA 173
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 180 CVPPLPRPLAECPLAG*PQTTCPLAGWPQTTLVPNSC 70
C PP P P A C P T PL Q + N C
Sbjct: 109 CCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPC 145
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 15 PPXXFF*KGGXXFGDPPGCRNSAQGW---SGANLPGDMWSGVSL 137
PP F +G G GC+ S+ G SGAN G W+G SL
Sbjct: 218 PPYGF--RGDSQSGG--GCQGSSSGGASGSGANNGGSFWTGASL 257
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 55 VIPRAAGIRHKGGLGPTCQGTCGLGSAC 138
+ P A G GG G C G CG G C
Sbjct: 21 LFPSAGGGGGGGGCGGGCGGGCGGGGGC 48
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 55 VIPRAAGIRHKGGLGPTCQGTCGLGSAC 138
+ P A G GG G C G CG G C
Sbjct: 21 LFPSAGGGGGGGGCGGGCGGGCGGGGGC 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,321
Number of Sequences: 27780
Number of extensions: 260574
Number of successful extensions: 663
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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