Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H02
         (504 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...    54   1e-06
UniRef50_Q7RTB6 Cluster: Dynein beta chain, ciliary; n=12; Plasm...    32   6.4  

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score = 54.4 bits (125), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +1

Query: 349 WGKGFGPRGPPMRKSPVEEKALRYLRRSGVSKENSKNLPFHLLKLYEPHQC 501
           +G+GFGP GP MR+    E+  RYL R G++K++ KN+P  +L   EP  C
Sbjct: 89  FGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYC 139


>UniRef50_Q7RTB6 Cluster: Dynein beta chain, ciliary; n=12; Plasmodium
            (Vinckeia)|Rep: Dynein beta chain, ciliary - Plasmodium
            yoelii yoelii
          Length = 5174

 Score = 32.3 bits (70), Expect = 6.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 386  ENHLWKKKLSDTLDVVVFLKRIRKIFHFIC*NYMNHTNV 502
            E +LW+KK+S+  +V+  LK I K++ ++   Y+N   V
Sbjct: 1374 ELNLWQKKISNIYEVIQLLKDIEKLWAYLQNMYINSEEV 1412


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,959,320
Number of Sequences: 1657284
Number of extensions: 4129612
Number of successful extensions: 9662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9662
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)