Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H02
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    27   2.1  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   8.5  

>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 KCGAKDLVLEDHQ*ENHLWKKKLSDTLDVVVFLKRIRKIFHFI 472
           K GAK+ +LE    ++   K+ L    DVV+ L R +K++  I
Sbjct: 120 KLGAKNPILEKLPSDSGAQKRYLEKVKDVVLKLNRSKKLYQQI 162


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 404 KKLSDTLDVVVFLKRIRKI 460
           +K  DT DVV+ +KR RKI
Sbjct: 435 RKTIDTQDVVLLMKRQRKI 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,102
Number of Sequences: 5004
Number of extensions: 18448
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)