Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_H01
         (427 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   8.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   8.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   8.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   8.7  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 257 GTCGGYRRFVARLGYVT 207
           G C  YR+F AR    T
Sbjct: 540 GLCNFYRKFCARYSAAT 556


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 393 WREAVPEAF 367
           WRE +PEA+
Sbjct: 261 WREPLPEAY 269


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 312 TVTSPSELTMSLSRPLGPRDVR 247
           ++T P++  +   RPL P   R
Sbjct: 35  SITQPTKTVIQSKRPLAPAPER 56


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 350 VHHLENCRFRHLSQSP 303
           VHHLE  R +   QSP
Sbjct: 12  VHHLEPHRMQIKPQSP 27


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 350 VHHLENCRFRHLSQSP 303
           VHHLE  R +   QSP
Sbjct: 12  VHHLEPHRMQIKPQSP 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,439
Number of Sequences: 336
Number of extensions: 2367
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)