Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_H01
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 101 4e-23
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 53 2e-08
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 52 3e-08
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 50 2e-07
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 49 3e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 41 9e-05
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 38 9e-04
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 37 0.001
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 31 0.099
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.30
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 25 3.7
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 25 3.7
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo... 25 4.9
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 25 4.9
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 25 6.5
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 24 8.6
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 8.6
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 101 bits (243), Expect = 4e-23
Identities = 43/66 (65%), Positives = 57/66 (86%)
Frame = +2
Query: 131 DEYGRPFIIIKDQEKQNRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVT 310
D+ G PFI+++DQEK+ RL GIDA+KSHI A + +A I+RTSLGPRGLDK+++S DGE+T
Sbjct: 12 DDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEIT 71
Query: 311 VTNDGS 328
VTNDG+
Sbjct: 72 VTNDGA 77
Score = 44.8 bits (101), Expect = 6e-06
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3
Query: 327 ATILKMMDVEHQIGKLLVQLPARVRIDEIGDGT 425
ATIL M+VEHQI KLLVQL ++ + DEIGDGT
Sbjct: 77 ATILDQMEVEHQIAKLLVQL-SKSQDDEIGDGT 108
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 52.8 bits (121), Expect = 2e-08
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = +2
Query: 209 SHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDGS 328
S+I AAR +A +RTSLGP+G+DK++ + GEV +TNDG+
Sbjct: 23 SNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGA 62
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 52.4 bits (120), Expect = 3e-08
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +2
Query: 182 RLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDGS 328
+++G D ++ A IA ++++SLGP GLDK++V G+VTVTNDG+
Sbjct: 16 KISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGA 64
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +3
Query: 327 ATILKMMDVEHQIGKLLVQLPARVRIDEIGDGT 425
ATIL ++DVEH GK+LV+L A+ + E+GDGT
Sbjct: 64 ATILSLLDVEHPAGKVLVEL-AQQQDKEVGDGT 95
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 50.0 bits (114), Expect = 2e-07
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +2
Query: 179 NRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDG 325
NR G A S+IQAA+ +A ++RT LGPR + K+++ G V +TNDG
Sbjct: 13 NRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDG 61
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 49.2 bits (112), Expect = 3e-07
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +2
Query: 146 PFIIIKDQEKQNRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDG 325
P I++K+ ++ G L S+I A + +RT+LGP G DKLMV GEV ++NDG
Sbjct: 9 PVIVLKEGTDDSQ--GRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 326 S 328
+
Sbjct: 67 A 67
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 40.7 bits (91), Expect = 9e-05
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 146 PFIIIKDQEKQNRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVS-SDGEVTVTND 322
P I + Q R G +A S A + +++++LGP+G+DK++ S S G++ VTND
Sbjct: 5 PHQIFNESGIQER--GENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTND 62
Query: 323 GS 328
G+
Sbjct: 63 GA 64
Score = 31.9 bits (69), Expect = 0.043
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +3
Query: 327 ATILKMMDVEHQIGKLLVQLPARVRIDEIGDGT 425
ATILK + +++ K+LV + ++V+ DE+GDGT
Sbjct: 64 ATILKSIALDNAAAKVLVNI-SKVQDDEVGDGT 95
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 9e-04
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 173 KQNRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDG 325
K + AL+ +I AA + +L+++LGP G K++V G + +T DG
Sbjct: 8 KAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDG 58
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 37.1 bits (82), Expect = 0.001
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +2
Query: 197 DALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDGS 328
DA+ + A R+++ I RTSLGP G +K++V+ + +TND +
Sbjct: 26 DAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAA 69
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.7 bits (66), Expect = 0.099
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 380 YQKLSNLMLDVHHLENCRFRHLSQSPRHQNSP*AYRDPSDQ 258
+ +S+L +H L C F HL P+H N A+ P++Q
Sbjct: 7 FDAISSLKSSLHGLSICAFNHLHHVPQH-NGSLAHEGPTNQ 46
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.30
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 191 GIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDG 325
G+DA S + +A + +LGP+G + L+ G +T DG
Sbjct: 40 GVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDG 84
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 308 TVTNDGSDNSQDDGRRASDWKASGT 382
TV NDGS DD R A DW T
Sbjct: 517 TVLNDGSLMYIDDFREAYDWLRRNT 541
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 173 KQNRLTGIDALKSHIQAARQIAGILRTSLGPRGLDKLMVSSDGEVTVTNDGS 328
+Q + G+D++ H AAR I + R ++ R +V+ G V V +DG+
Sbjct: 367 EQGLMRGVDSISQHTLAAR-ITAVHRLAVERR----CVVAMSGAVDVISDGN 413
>SPAC12G12.05c |taf9||transcription initiation factor
Taf9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 163
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 264 GPRDVRRIPAICRAAWICDFRASIPVSLFCFS 169
GP+DVR I I + + + ++P+ L F+
Sbjct: 13 GPKDVRLIHLILSSLGVPSYSQTVPLQLLTFA 44
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 4.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 233 IAGILRTSLGPRGLDKLMVSSDGEVTVTNDG 325
+ G L GLD MVS DG+VT+ DG
Sbjct: 128 LGGAQLNYLADNGLD--MVSFDGDVTLYEDG 156
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 6.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 222 AWICDFRASIPVSLFCFSWSFIIINGRPYSSKATAPGNMAI 100
A+ICD +S+PV L F W ++ + Y+ + G AI
Sbjct: 160 AFICDILSSMPVIL--FPWEKVVKLCKKYNIVSIIDGAHAI 198
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 309 VTSPSELTMSLSRPLGPRDVRRIPAICRAAW 217
+T P T L PL R+ R+P +C A W
Sbjct: 92 LTLPGVRTQGL--PLKHRNNERLPYLCNAIW 120
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 308 TVTNDGSDNSQDDGRRASDWKASGTASRQSQD 403
T+ D S N QDD +D+K S QSQD
Sbjct: 31 TLVKDNSFNEQDDQEVDNDYK-SNDEPVQSQD 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,929
Number of Sequences: 5004
Number of extensions: 37608
Number of successful extensions: 140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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